BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0238.p
         (167 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...   105   2e-24
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    79   1e-16
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    75   2e-15

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  105 bits (261), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 79/141 (56%)

Query: 5   EPLDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDK 64
           E  DR D  +LE LQ +GR SNVEL+E V+LSP  C  R +R+E+ G+I GY A +    
Sbjct: 2   EKFDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAA 61

Query: 65  LGSHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQE 124
           LG  V  F  + +   +    R+ EQ   ++ EI+ECY +SG +DYLLK++A  + +   
Sbjct: 62  LGLGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSS 121

Query: 125 LMERLLEEEIGIKKFASRIVL 145
            +   L +  G+    S + L
Sbjct: 122 FLTDRLMQVPGVAGVRSMVCL 142


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 79.0 bits (193), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 1   MRPTEPLDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQI 60
           M     LD+ D K+L  LQ++ +     LA+ V +S   CL R + M ++GII+   A I
Sbjct: 1   MSKLHTLDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMI 60

Query: 61  ALDKLGSHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVS 120
               LG  +  F E++L +       +FE    R  E+++CY VSG YDY L +    + 
Sbjct: 61  DPFALGYGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMD 120

Query: 121 AFQELMERLLEEEIGIKKFASRIVL-RHPFAQRV 153
           A+ + + R +     ++ F SR  + R  F  R+
Sbjct: 121 AYYQFVRRAISGSGNVRHFQSRFPMKRAKFDTRI 154


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 74.7 bits (182), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 69/135 (51%)

Query: 7   LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66
           LD  D +IL  LQ +   +N +LA AV  SP  CL R KR+ ++G+I    A ++  K+G
Sbjct: 8   LDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKIG 67

Query: 67  SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126
           + +    EITL +       +FE   A    +++CY VS G D++L I    + A+  L+
Sbjct: 68  AGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNALV 127

Query: 127 ERLLEEEIGIKKFAS 141
            RL      ++   S
Sbjct: 128 HRLFASHANVRNVKS 142


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 309,955
Number of extensions: 11557
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 92
Effective length of database: 753,222
Effective search space: 69296424
Effective search space used: 69296424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)