BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0237.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095152|ref|YP_001100227.1| putative enoyl-CoA hydratase/is...   107   4e-25
gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimo...   100   6e-23
gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimo...    91   7e-20

>gi|134095152|ref|YP_001100227.1| putative enoyl-CoA
           hydratase/isomerase family protein [Herminiimonas
           arsenicoxydans]
          Length = 301

 Score =  107 bits (268), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 121/258 (46%), Gaps = 10/258 (3%)

Query: 2   DIQLTKADGILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSAG 61
           +I+ ++ +  L +       KNA+   M+    +    A  D ++RA++ TG    F AG
Sbjct: 46  EIRASRHEATLILTLSNPGAKNALHPDMFAAAIETFSTAARDDSIRAVILTGADNFFCAG 105

Query: 62  NDLEDFLKHPPKTQDA--------PVFQFLWQISHASKPIVAAVAGVAVGIGTTLLLHCD 113
            +L   L+   + QD          +  ++  I    KP++AAV   A G G +L L CD
Sbjct: 106 GNLNTLLE--LRAQDRADQADAVDSLRGWIEAIRDCPKPVIAAVESAAAGAGFSLALACD 163

Query: 114 LVYAADNAKFSMPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVN 173
           L+ A  NAKF+M +  +GL P+  +S  L      Q A E +L G+   A     +G +N
Sbjct: 164 LIVAGANAKFAMSYVNIGLTPDGGASWFLSQALPRQLATEIMLEGKPVPAQRLHDLGVIN 223

Query: 174 RVMPVEELLAYAHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEP 233
           R++     L  +   A +LAAL   ++   K L ++ R  +  Q   +E  HF   L   
Sbjct: 224 RIVADGATLQTSLDWADELAALSGHAVERIKSLTREARDHSLPQHFEIEKNHFVDSLNHR 283

Query: 234 EAKEAFTAFFEKRKPDFR 251
           +A+E   AF EKR P ++
Sbjct: 284 DAQEGIHAFLEKRAPHYK 301


>gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score =  100 bits (249), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 112/248 (45%), Gaps = 16/248 (6%)

Query: 14  IHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSAGNDLE-------- 65
           I  +R    NA+   +  +L  AL   + +  +  ++ TG  +AF+AG D+         
Sbjct: 17  ITLNRPAALNALNDKLMDELGKALLSFDANEDIGCMIITGSEKAFAAGADIGAMATYSYM 76

Query: 66  DFLKHPPKTQDAPVFQFLW-QISHASKPIVAAVAGVAVGIGTTLLLHCDLVYAADNAKFS 124
           D  K    T++       W QI    KP++AAVAG A+G G  L + CD + AAD AKF 
Sbjct: 77  DVYKGDYITRN-------WEQIRSVRKPVIAAVAGYALGGGCELAMMCDFIIAADTAKFG 129

Query: 125 MPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVMPVEELLAY 184
            P  +LG+ P A  +  LP      +A +  L      A EA + G V+RV+  ++L   
Sbjct: 130 QPEIKLGIIPGAGGTQRLPRSVSKSKAMDMCLTARMMDAAEAERAGLVSRVVAADKLQEE 189

Query: 185 AHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEPEAKEAFTAFFE 244
           A   A  +A++    + + K+ + +   T   + +  E   F       + KE   AF E
Sbjct: 190 ALAAATVIASMSLPMVMMIKESINRAYETTLAEGVQFERRLFHSTFATEDQKEGMRAFVE 249

Query: 245 KRKPDFRQ 252
           KR   F+ 
Sbjct: 250 KRAAKFKN 257


>gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimonas
           arsenicoxydans]
          Length = 264

 Score = 90.5 bits (223), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 116/254 (45%), Gaps = 14/254 (5%)

Query: 3   IQLTKADGILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTG-KPQAFSAG 61
           + L   DGI  I FDR   +NA+T AMY +L    +    D ++R   F G   +AF AG
Sbjct: 12  VHLAIQDGIAAILFDRPQARNAMTWAMYTELGAICERIRADQSIRVTTFRGAGGEAFVAG 71

Query: 62  NDLEDFLKHPPKTQDAPVF-----QFLWQISHASKPIVAAVAGVAVGIGTTLLLHCDLVY 116
            D+E F ++    +D   +     + + QI     P +A V G A+G G  +   CD   
Sbjct: 72  TDIEQF-RNFSSGEDGIAYERIVDERIGQIEALPMPTLAIVDGWAIGGGLAIAAACDFRI 130

Query: 117 AADNAKFSMPFTQ-LGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRV 175
           A   ++F +P  + LG C   A+   +    G  RA   LLL E   ADE    GFV  V
Sbjct: 131 ATPASRFGIPIARTLGNCLSMANIARVVAAFGVGRAKRILLLAEVLAADELLAAGFVTEV 190

Query: 176 MPVEELLAYAHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSR-MLTEPE 234
           +    L A A     KLA+    ++ ++K+ ++  R+T   Q  + + E   R      +
Sbjct: 191 VEAAVLDATADALCKKLASNAPITMGVSKEAIR--RLT---QAGLPDGEDLIRACYGSSD 245

Query: 235 AKEAFTAFFEKRKP 248
            K    AF EK++P
Sbjct: 246 FKIGVHAFLEKQRP 259


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 389,864
Number of extensions: 12534
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 4
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)