BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0235.p
         (805 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095997|ref|YP_001101072.1| 3-hydroxyacyl-CoA dehydrogenase...  1282   0.0  

>gi|134095997|ref|YP_001101072.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 799

 Score = 1282 bits (3318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/799 (79%), Positives = 706/799 (88%), Gaps = 4/799 (0%)

Query: 11  VSNFIVKKVAVLGAGVMGAQIAAHCINARVPVVLFDLPAKEGPKNGIVQRAIENLKKLSP 70
           ++NFIVKKVAVLGAGVMGAQIAAHC+NA+VPVVLFDLP K+G +NG+V RA+ NLKKLSP
Sbjct: 1   MANFIVKKVAVLGAGVMGAQIAAHCVNAKVPVVLFDLPGKDGDQNGVVLRALANLKKLSP 60

Query: 71  APLGNKDDAALIQVANYEDDLAVLEGCDLIIEAIAERMDWKHDLYKKVAPHIAPKAIFAT 130
           APL N D AALI+VANY DDL  L  CDLIIEAIAERMDWKHDLYKKVAPHIAP AIFA+
Sbjct: 61  APLANPDHAALIEVANYADDLEKLGECDLIIEAIAERMDWKHDLYKKVAPHIAPNAIFAS 120

Query: 131 NTSGLSINALSEGFDAALKARFCGVHFFNPPRYMHLVELIPTQSTEPHILDQLEAFLTTT 190
           NTSGLSI AL+EGFDA LKARFCGVHFFNPPRYMHLVELIPT +T P ILDQLE FLT+T
Sbjct: 121 NTSGLSITALAEGFDADLKARFCGVHFFNPPRYMHLVELIPTAATSPEILDQLEGFLTST 180

Query: 191 LGKGVVRAFDTPNFVANRVGVFGILATIIEADKYGLSVDVVDDLTGAKLGRAKSGTFRTA 250
           LGKGVVRAFDTPNF+ANRVG+FG+LAT+ EA+K+GLSVDVVDDLTG+KLGRAKSGTFRTA
Sbjct: 181 LGKGVVRAFDTPNFIANRVGIFGMLATMHEAEKFGLSVDVVDDLTGSKLGRAKSGTFRTA 240

Query: 251 DVVGLDTMGHVIRTMQDNLKDDPFFSTYATPPLLAKLVEQGALGQKSGAGYYKKVGKDIL 310
           DVVGLDTM HVI TMQ+ L+DDPFF  Y TP +L +L+  GALGQK+GAG+YKKVGKDIL
Sbjct: 241 DVVGLDTMAHVITTMQNTLQDDPFFPVYKTPEILTRLIGGGALGQKAGAGFYKKVGKDIL 300

Query: 311 RIDPAKGDYVPGGGKADDIIARILKEKDPVKRMKALHDSTNPQGQFLWAIFRDAFHYIAV 370
           RIDPAK DYV GGGKADD+I RILKEKDP +RM+ALHDS++PQ QFLWAIFRD FHYIAV
Sbjct: 301 RIDPAKADYVAGGGKADDLIGRILKEKDPARRMQALHDSSHPQAQFLWAIFRDVFHYIAV 360

Query: 371 HLESVADNARDLDFAMRWGFGWSVGPFETWQAAGWKQIAQWVKEDIDAGRALSNAPLPDW 430
           HLE+VADNARD+DFA+RWGFGW+ GPFETWQA+GW+QIA WVKEDIDAG+ALSNA LP W
Sbjct: 361 HLETVADNARDVDFALRWGFGWTHGPFETWQASGWQQIASWVKEDIDAGKALSNAALPAW 420

Query: 431 VFDG----RDGVHSEQGSYSPSKKTDVARSELPVYQRQAFRAPLVGEGAADGKSAGTTVF 486
           VFDG      GVH+  GS+SP +   V RS LPVYQRQ FRA LVG+ AA+G +AGTT  
Sbjct: 421 VFDGPVAKNAGVHTANGSWSPVQNKYVVRSNLPVYQRQVFRAGLVGDQAANGSTAGTTFH 480

Query: 487 EDESVRIWHQNDDVLILSFKTKMHVIGQGVIDGMNKAVTEAEQNFKGLVIWHPDAAEGGA 546
           ED+SVRIWHQ+DDVLILSFKTKMHVIG  V  G+ KA+ EAE+N+KGLVIWH DAAEGGA
Sbjct: 481 EDDSVRIWHQDDDVLILSFKTKMHVIGSEVTAGIGKAIAEAEKNYKGLVIWHADAAEGGA 540

Query: 547 FSAGADLQSMLPLFMSGGVKAIEPVVHQLQQAHQRLKYASVPVIAAVAGLALGGGCELLL 606
           FSAGADLQSMLPLFMSGGVKAIEP V +LQQAHQ +KYA+VPV+AAVAGLALGGGCELLL
Sbjct: 541 FSAGADLQSMLPLFMSGGVKAIEPEVVKLQQAHQAMKYANVPVVAAVAGLALGGGCELLL 600

Query: 607 HTAKRVVSIESYIGLVEVGVGLIPAGGGLKEAAVRAAREAKGNDILQFLKEYMLAAATAN 666
           H AKRV SIESYIGLVEVGVGLIPAGGGLKEAAVRAA EAKG+DILQFLK Y + AATA 
Sbjct: 601 HAAKRVASIESYIGLVEVGVGLIPAGGGLKEAAVRAAHEAKGSDILQFLKHYYMNAATAA 660

Query: 667 VSKSALEARKLGYLREDDVIVFNPYELLHVAKVEARALFDAGYRPQLPPQVPVIGRNGLA 726
           VS+SALEA+ +GYL+ DD+IVFNPYELLH+AK +ARA+FDAGYR      VPV G+ GLA
Sbjct: 661 VSRSALEAQTMGYLKSDDIIVFNPYELLHIAKTQARAMFDAGYRAPRKALVPVTGKYGLA 720

Query: 727 TIMAQLVNMRDGGFISAHDFKLGKMIAETVAGGEVEEGSIVNEQWLLDIERKFFMELLNH 786
           TI AQL+NMRDGGFISAHD+KLG MIAE V+GGE+E+GS+V+EQWLLD ERK FMELLNH
Sbjct: 721 TIGAQLINMRDGGFISAHDYKLGLMIAEIVSGGEIEQGSLVDEQWLLDRERKAFMELLNH 780

Query: 787 PKTQERIMGMMQTGKPVRN 805
           PKTQERIMGMMQTGKPVRN
Sbjct: 781 PKTQERIMGMMQTGKPVRN 799


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,554,901
Number of extensions: 67652
Number of successful extensions: 212
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 805
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 716
Effective length of database: 707,092
Effective search space: 506277872
Effective search space used: 506277872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)