BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0234.p (596 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 1039 0.0 gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 457 e-130 gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 100 2e-22 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/596 (81%), Positives = 543/596 (91%) Query: 1 MPQYNAPLRDMQFVLHELLKVEEVFKELPPHADTNRELVDQVLEEGGKFASQVLFPLNHS 60 M QY APLRDMQFVLHELL E+ K++ + D + ++++QVLEEGGKF S+VLFPLNHS Sbjct: 1 MGQYIAPLRDMQFVLHELLHAEDELKQMQKYVDIDADIINQVLEEGGKFTSEVLFPLNHS 60 Query: 61 GDREGCHYDRDSKTVTTPKGFKEAYQQYVQAGWAALSCDPEFGGQGLPLTINNSFYEMLN 120 GDREGC D + VT P GFK AY QYV AGW +LSCDPE+GGQGLP+ + NSF+EMLN Sbjct: 61 GDREGCTLDPVTHEVTPPAGFKAAYAQYVAAGWPSLSCDPEYGGQGLPMVLQNSFFEMLN 120 Query: 121 SSNQAWTMYPGLSHGAYECLHAHGSDEQKQLYLPKLVSGEWTGTMCLTEAHCGTDLGLLR 180 SSNQAWTMYPGLSHGAYECLH HG+ EQK LYLPKLVSGEWTGTMCLTEAHCGTDLGLLR Sbjct: 121 SSNQAWTMYPGLSHGAYECLHEHGTAEQKALYLPKLVSGEWTGTMCLTEAHCGTDLGLLR 180 Query: 181 SKAEPQADGSYKITGNKIFISAGENDVSGNIIHLVLARLPDAPEGSKGISLFLVPKFLPN 240 SKAEPQADGSYKITG+KIFISAGE+D+ NI+HLVLARLPDAP+G+ GISLF+VPKFLPN Sbjct: 181 SKAEPQADGSYKITGSKIFISAGEHDMVQNILHLVLARLPDAPQGTHGISLFIVPKFLPN 240 Query: 241 TDGSLGARNPIFCGAIEEKMGIHGNATCQMNLDGATGWLIGQPHKGLQAMFVFMNAARLG 300 DG+LGARNPIFCGA+EEKMGIHGNATCQMN+DGATGW+IGQP+KGL AMFV MNAARLG Sbjct: 241 ADGTLGARNPIFCGALEEKMGIHGNATCQMNIDGATGWMIGQPNKGLNAMFVMMNAARLG 300 Query: 301 VGMQGLGLTEVAYQNALVYAKDRLQMRSLSGVKAADKPADPIIVHPDVRRMLLTAKAFAE 360 VGMQ LGLTEVAYQNAL+YAKDRLQMRSL+GVKAADKPADPIIVHPDVRRMLLTAKA+AE Sbjct: 301 VGMQSLGLTEVAYQNALLYAKDRLQMRSLTGVKAADKPADPIIVHPDVRRMLLTAKAYAE 360 Query: 361 GGRAFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYGG 420 GGRAF+SYVAL++D+EL HPDE VRKD+AD VALLTP++KAFLTDN W+ATSE +QVYGG Sbjct: 361 GGRAFSSYVALQIDRELNHPDEAVRKDAADEVALLTPIIKAFLTDNGWIATSEAMQVYGG 420 Query: 421 HGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFGAQIQAFVEEH 480 HGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKIL+DNGAKL+KFG +I+ F+EE+ Sbjct: 421 HGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILLDNGAKLRKFGEKIRVFIEEN 480 Query: 481 GTDESMSEFITPLADIGDKVTKLTMEIGMKSFANQDEAGAAAVPYLRVVGHLVFSYLFAR 540 GTDE+MSEFITPLAD+ +KVTKLTMEIGMK+F N DEAGAAAVPYLRV GHLV++Y FA+ Sbjct: 481 GTDEAMSEFITPLADLAEKVTKLTMEIGMKAFQNPDEAGAAAVPYLRVAGHLVYAYFFAQ 540 Query: 541 MAKIALEKQDSGDAFYTAKLATARFYFARLLPETAMLIRQARSGAGNLMALDAQLF 596 MA++AL KQD GD FY AKLAT+RFYFARLLPETAMLIRQARSG+ NLMALDA+LF Sbjct: 541 MARLALAKQDGGDNFYKAKLATSRFYFARLLPETAMLIRQARSGSANLMALDAELF 596 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 457 bits (1176), Expect = e-130, Method: Compositional matrix adjust. Identities = 260/602 (43%), Positives = 356/602 (59%), Gaps = 15/602 (2%) Query: 3 QYNAPLRDMQFVLHELLKVEEVFKELPPHADTNRELVDQVLEEGGKFASQVLFPLNHSGD 62 +Y APL+DM FV++EL + V LP D E V+ VLEE +F S+V+ PLN +GD Sbjct: 2 RYVAPLKDMLFVMNELADLAAV-NTLPGCEDATPETVEAVLEENARFCSEVIAPLNQTGD 60 Query: 63 REGCHYDRDSKTVTTPKGFKEAYQQYVQAGWAALSCDPEFGGQGLPLTINNSFYEMLNSS 122 R+ + +D TTP GFKEA++ Y AGW + FGGQGLP + EMLN++ Sbjct: 61 RQPSAW-KDGAVTTTP-GFKEAFKAYGAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAA 118 Query: 123 NQAWTMYPGLSHGAYECLHAHGSDEQKQLYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSK 182 N ++ + P L+ GA E L GS+ QK+ +LP ++G+WTGTM LTE G+DL ++RS+ Sbjct: 119 NLSFALCPLLTDGAIEALMTAGSEAQKETFLPNFIAGKWTGTMNLTEPQAGSDLAMVRSR 178 Query: 183 AEPQADGSYKITGNKIFISAGENDVSGNIIHLVLARLPDAPEGSKGISLFLVPKFLPNTD 242 A PQ DG+YKI+G KIFI+ GE+D++ NI+HLVLAR PDAPEG KGISLF+VPKFL N D Sbjct: 179 AVPQGDGTYKISGTKIFITYGEHDMAENIVHLVLARTPDAPEGVKGISLFVVPKFLVNAD 238 Query: 243 GSLGARNPIFCGAIEEKMGIHGNATCQMNL---DGATGWLIGQPHKGLQAMFVFMNAARL 299 GSLGARN +C +IE K+GI + T + GA G L+G+ ++GL+ MF+ MNAAR Sbjct: 239 GSLGARNDAYCVSIEHKLGIRASPTAVLQFGDHGGAIGTLVGEENRGLETMFIMMNAARF 298 Query: 300 GVGMQGLGLTEVAYQNALVYAKDRLQMRSLSGVKAADKPADPIIVHPDVRRMLLTAKAFA 359 VG+QG+ + E AYQ A+ YAKDR+Q + L G A II PDVRRML++ +A Sbjct: 299 AVGIQGIAVAERAYQKAVSYAKDRVQSKDLEG----SATAVSIIHQPDVRRMLMSMRAQI 354 Query: 360 EGGRAFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYG 419 E RA A D H D +VR L PV+K + T+ + S LQ++G Sbjct: 355 EAARALAYVGAAAFDIAHHHADAEVRSSHQAFYEFLVPVIKGWATEMSIDVASTGLQIHG 414 Query: 420 GHGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFGAQIQAFVEE 479 G G+I E G QY RDARI IYEGT IQ+ DL+GRK D GA + A+++ E Sbjct: 415 GMGFIEETGAAQYYRDARILTIYEGTTAIQANDLVGRKTARDGGAVARDIIARVRKTEAE 474 Query: 480 HGTDESMSEFITP--LADIGDKVTKLTMEIGMKSFANQDEAGAAAVPYLRVVGHLVFSYL 537 S LA + ++ + A+ A +VPYL++ G ++ + Sbjct: 475 LAAAASADLQAIGRHLAAASTSLDEVVAYVVANIQADIKGVFAGSVPYLKLAGIVLGGWQ 534 Query: 538 FARMAKIALEKQDS--GDA-FYTAKLATARFYFARLLPETAMLIRQARSGAGNLMALDAQ 594 AR A IA +K ++ GDA FY AK+ATARF+ L + +G+ ++ALD Sbjct: 535 MARAALIAQQKLNAQEGDAKFYQAKIATARFFADYYLSQAGAYRSAIVAGSSGVLALDED 594 Query: 595 LF 596 F Sbjct: 595 QF 596 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 35/294 (11%) Query: 165 MCLTEAHCGTDL----GLLRSKAEPQADGSYKITGNKIFISAGENDVSGNIIHLVLARLP 220 M +TE G+D+ + R+ Y +TG+K F SA D HLVLAR Sbjct: 180 MGMTEKQGGSDVRSNTTVARAVHGSGRGADYALTGHKWFFSAPMCDA-----HLVLARTE 234 Query: 221 DAPEGSKGISLFLVPKFLPNTDGSLGARNPIFCGAIEEKMGIHGNATCQMNLDGATGWLI 280 + G+S F VP++ P+ G+RN + +++K+G N++ ++ A G ++ Sbjct: 235 N------GLSCFFVPRWRPD-----GSRNAVLIQQLKDKLGNRSNSSSEVEFQDAYGVMV 283 Query: 281 GQPHKGLQAMFVFMNAARLGVGMQGLGLTEVAYQNALVYAKDRLQMRSLSGVKAADKPAD 340 G+ +G+ + N RL + GL +NALV A + RS G Sbjct: 284 GEEGRGIPTIIEMANHTRLDCVIGSAGLM----RNALVQAIHHARHRSAFG--------H 331 Query: 341 PIIVHPDVRRMLLTAKAFAEGGRAFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVK 400 P+ P +R +L +E +A D PD+ + + I LTP K Sbjct: 332 PLAEQPLMRNVLSDLALESEAATLLMLRLARAADASRDAPDDLLERAWRRI---LTPAAK 388 Query: 401 AFLTDNAWMATSECLQVYGGHGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLL 454 ++ + EC++V+GG+GYI M + R+A +N I+EG+ + LD+L Sbjct: 389 FWVCKRVLEFSGECMEVWGGNGYIENAPMARMFREAPVNSIWEGSGNVMCLDVL 442 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,159,856 Number of extensions: 50340 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 3 Length of query: 596 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 509 Effective length of database: 713,682 Effective search space: 363264138 Effective search space used: 363264138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)