BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0231.p
         (124 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095999|ref|YP_001101074.1| putative the heat shock protein...   159   5e-41

>gi|134095999|ref|YP_001101074.1| putative the heat shock protein
           Hsd15 [Herminiimonas arsenicoxydans]
          Length = 126

 Score =  159 bits (401), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 97/122 (79%)

Query: 2   DTTRIDKWCWAARFFKTRSQATEAVDRGRIKLNGERTKPAHNVKTGDRLQIDNGSTEWEV 61
           ++ RIDKW WAARFFKTR+ A++AVD G++++  ER KPA NV+ GD +QIDNGS+ WEV
Sbjct: 4   ESVRIDKWLWAARFFKTRTLASDAVDNGKVRIERERIKPARNVRCGDLVQIDNGSSVWEV 63

Query: 62  LVTGIADKRGSAAIAATLYQESEESLARRAAQAERHRLFREPSAEIKGRPTKRDRRLLDR 121
           LV G++D RGSA +A  LY E+EES+ +R  +A++ + F+EP   IKGRPTKRDRRLLD+
Sbjct: 64  LVRGLSDVRGSAEMAQKLYAETEESIVKRQQEADKRKFFKEPGMTIKGRPTKRDRRLLDK 123

Query: 122 SS 123
           ++
Sbjct: 124 TN 125


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 197,225
Number of extensions: 6828
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 53
Effective length of database: 766,402
Effective search space: 40619306
Effective search space used: 40619306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)