BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0222.p
         (391 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094917|ref|YP_001099992.1| L-lactate dehydrogenase [Hermin...   281   3e-77

>gi|134094917|ref|YP_001099992.1| L-lactate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 381

 Score =  281 bits (720), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 225/375 (60%), Gaps = 6/375 (1%)

Query: 16  SIEELRAIARKRVPNFCFEYVEGGAEEEISLRRNREVFSHIGFLPRTLVDVSVRRQARKL 75
           +IE+LR +A+KRVP   ++Y + G+  E + R N E F+ + F  R  V++  R     +
Sbjct: 6   NIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANSEDFARMKFRQRVAVNMENRTLKTTM 65

Query: 76  FGQEIASPFLIGPTGFSGLLAREGDIAMASAAAGAGIPFVLTNVSTTSLEEVVRRSGAQV 135
            GQE+  P  I PTG +G+   +G+I  A AA   GIPF L+ +S  S+E++   +    
Sbjct: 66  VGQEVHMPVAIAPTGLTGMQHADGEILAARAAEKFGIPFTLSTMSICSIEDIAAHTSKPF 125

Query: 136 WQQVYLYRDRAFVASVAQRAQAAGIDTLVLTTDSAVYGKREWDVRN-FSSPRRLDWRNKL 194
           W Q+Y+ +DR F+  + +RA+AA    LVLT D  + G+R  D++N  S+P +L   N L
Sbjct: 126 WFQLYVMKDRPFIERLIERAKAAKCSALVLTLDLQILGQRHKDLKNGLSAPPKLTIPNIL 185

Query: 195 DVLCHPRWLIDILYPHGFPRFANLGDLL-PADQTSVRGAAASILGQSLSPALDWRDVQWL 253
           +++  PRW + +L      R  + G+++  A   S   + ++   Q    AL W+DV+W+
Sbjct: 186 NMMGKPRWCMGMLGT----RRRSFGNIVGHASDVSDMSSLSAWTSQQFDLALSWKDVEWI 241

Query: 254 RGIWNGKLVLKGVMQVQDAQRAVALGMDGIVLSNHGGRQLDGALSTMDVLPEVVAAVKGQ 313
           +  W GKL++KG+M  +DA+ AVA G D I++SNHGGRQLDGALS++  LP +V AV  Q
Sbjct: 242 KKCWGGKLIIKGIMDAEDARLAVASGADAIIVSNHGGRQLDGALSSIAALPSIVEAVGDQ 301

Query: 314 LTVMLDGGFRRGADIVKAIALGADAVLLGRATTYGLAAGGQAGAARALDILRSEVDRVLA 373
           + V +DGG R G D++KA+ALGA    +GR+  YGL A G+ G ++ L+I+  E+D  +A
Sbjct: 302 IEVHMDGGIRSGQDVIKALALGAKGTYIGRSFLYGLGAMGEEGVSKCLEIIERELDLTMA 361

Query: 374 LLACPDIDQLDATYL 388
                D+ ++D   L
Sbjct: 362 FCGLTDVKKVDRKIL 376


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 707,344
Number of extensions: 28235
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 307
Effective length of database: 723,567
Effective search space: 222135069
Effective search space used: 222135069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)