BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0221.p
         (227 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   107   5e-25
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    96   2e-21

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  107 bits (267), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 9/208 (4%)

Query: 4   EFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGYVEL 63
           + DF  ++  W  LL G   T+QL+  A + G L G + A+AR S    L      YV L
Sbjct: 3   DLDFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNL 62

Query: 64  IRNTPLLIQCYFLIFGLSSV-----GITMPVMAGATMALVINI----GAYSCEIVRAGIE 114
           +R+ PLL+  ++  F +  V     G   PV  GA  +  I       AY CEI+RAGI+
Sbjct: 63  MRSIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQ 122

Query: 115 SIQHGQIEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELL 174
           SI  GQ+ AA+ LGLS  Q +R VVL  A   + P L +Q +++    S++S +   + +
Sbjct: 123 SISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFV 182

Query: 175 GVANRVQSDTFRNFEVFLVLWVLYLALS 202
           G + ++     R  E++L + ++Y  LS
Sbjct: 183 GASVKIAQRDSRVVEMYLFVAIVYFVLS 210


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 95.9 bits (237), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 11/200 (5%)

Query: 16  LLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGYVELIRNTPLLIQC-- 73
           +LL G   T+ ++F A +  F+LG +  +AR +   WL    G YVEL RN PLL+Q   
Sbjct: 20  MLLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFV 79

Query: 74  -YFLIFGLSSVGITMPVMAGATM----ALVINIGAYS----CEIVRAGIESIQHGQIEAA 124
            YF+I GL     T  +    T+      +I +G ++     E VR+GI+S+  GQ  A 
Sbjct: 80  WYFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAG 139

Query: 125 HCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRVQSDT 184
           + LGL+ +Q  R V+L  A   + P LTS+ + ++  +++  S+G  EL      +   T
Sbjct: 140 YALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMT 199

Query: 185 FRNFEVFLVLWVLYLALSCL 204
           FR FE F    ++Y+ ++ L
Sbjct: 200 FRYFEAFGAATLMYVVIAML 219


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 401,039
Number of extensions: 14311
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 148
Effective length of database: 740,042
Effective search space: 109526216
Effective search space used: 109526216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)