BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0219.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 212 1e-56 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 167 5e-43 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 157 5e-40 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 144 3e-36 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 143 7e-36 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 212 bits (540), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 110/221 (49%), Positives = 151/221 (68%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 ++E++ V K +G+ VL + VA+G+VV + G SGSGKST ++ +N LE G I+V Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQV 123 G +V + +L ALR +G+VFQ++ LF HL++ +N+TLG V + EA E + Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 124 LERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLKIME 183 L+RVGL + +P QLSGGQQQRVAIAR+LAM P MLFDE TSALDPE+ EVL +M Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 184 QMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPD 224 +A +GMTM++VTHEM FAR+VA++VIFM QG + E D Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKD 221 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 167 bits (422), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 148/244 (60%), Gaps = 15/244 (6%) Query: 5 VELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISVC 64 +E++ ++K+FGN L VS + GE+ A++G SG GK+T LR I LEQ D GQ+ + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 65 GHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLG----PTAVKRLAPAEA--QE 118 G + R VG VFQ Y LF H+TV +NI G P A + P+E+ +E Sbjct: 63 GEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATR---PSESVIKE 115 Query: 119 LARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEV 178 ++LE V L A YP QLSGGQ+QR+A+AR+LA++P+++L DE ALD ++ E+ Sbjct: 116 KVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 179 LKIMEQMAAE-GMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGP-DILDSPATPELRN 236 + + ++ E +T I VTH+ A VADQ++ M++G V + G P D+ ++PA+P + Sbjct: 176 RRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYG 235 Query: 237 FVGT 240 F+G Sbjct: 236 FLGN 239 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 157 bits (397), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 139/231 (60%), Gaps = 7/231 (3%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 +++L V R+G+ LR S K+ +G+ ++G SG+GKST LRCIN + Q AG I V Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLG----PTAVKRLAP--AEAQ 117 G + + L+A RR G+VFQ + L A T LQN+ +G T ++ L P E Q Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQEEQ 120 Query: 118 ELARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGE 177 + + L+RVGL KA +QLSGGQQQRV IAR+L QP+L+L DE ++LDP + + Sbjct: 121 RIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSEK 180 Query: 178 VLKIMEQMAAE-GMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPDILD 227 VL+I+ Q+ E G++ ++ H++ A + +D+++ + G+V P L+ Sbjct: 181 VLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTDLN 231 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 144 bits (364), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 130/229 (56%), Gaps = 14/229 (6%) Query: 4 IVELQAVHKRFGNNA----VLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAG 59 ++EL+ V K + N VL G+ K+ GE VAI+G SGSGKST + + L++ G Sbjct: 16 LIELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTG 75 Query: 60 QISVCGHAVHTTQLDLRAL--RRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQ 117 G V D RAL R D G VFQSYNL A + +N+ + P L PAE Sbjct: 76 SYYFMGRDVSDFGRDERALLRRDDFGFVFQSYNLIASASAAENVEV-PAMYSGLPPAERH 134 Query: 118 ELARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGE 177 A+ +L +GL D++ P QLSGGQQQRV+I+R+L +++L DE T ALD + + Sbjct: 135 ARAQALLTELGLADRSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQD 194 Query: 178 VLKIMEQMAAEGMTMILVTHEMSFARRVAD---QVIFMHQGQVWEQGGP 223 V+K++ ++A G T++L+TH A+ VAD ++I + G + GP Sbjct: 195 VMKLLADLSARGHTVLLITH----AKEVADHAQRLIEIKDGHILSDPGP 239 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 143 bits (361), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 137/249 (55%), Gaps = 15/249 (6%) Query: 2 HTIVELQAVHKRFGN--NAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAG 59 H +E V R G + ++ +SF + RG++ ++G+SG GK+T LR I E + G Sbjct: 14 HLSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEG 73 Query: 60 QISVCGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQEL 119 I++ G + R +G+VFQ Y LF HL+V N+ G +++LA E Q Sbjct: 74 SITLGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFG---LRKLAAPERQAR 130 Query: 120 ARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPE----LT 175 +L VGL + + +P +LSGGQQQRVA+AR+LA QP L+L DE S LD + L Sbjct: 131 IAALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLA 190 Query: 176 GEVLKIMEQMAAEGMTMILVTHEMSFARRVADQVIFMHQGQV--WEQGGPDILDSPATPE 233 EV I++++ G T +LVTH+ A +ADQ+ M G + W+ ++ PA Sbjct: 191 SEVRDILKEV---GTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAY-NLYHRPANRF 246 Query: 234 LRNFVGTGL 242 + +F+G G+ Sbjct: 247 VADFIGLGV 255 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 449,506 Number of extensions: 17420 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 48 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)