BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0218.p
         (269 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic...    60   8e-11

>gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic
           binding protein ABC transporter [Herminiimonas
           arsenicoxydans]
          Length = 300

 Score = 60.5 bits (145), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 14/272 (5%)

Query: 9   RRLRGALLGLLLLGASTAQ--ADQLDTIMAAKKLRVAIDLAVPPYSMKDDKLKLIGSDVE 66
           + L GA +   L+ A+ AQ  +  L  I    ++ +    +  P+S  DDK + IG  ++
Sbjct: 8   KTLIGAAMMSTLMTAAQAQELSGTLKKIKETGEITIGYRESSIPFSFLDDKQQPIGYAMD 67

Query: 67  -------TAQLMAKDFGLELEVVPTTLTNRVPFLQTNKADVVISAFSITAERAKVIDFSV 119
                  T +   K   L++++ P T +NR+P L     D+   + + +  R + + F  
Sbjct: 68  LCMKIVGTVKADLKLPALKVKLQPVTSSNRIPLLNNGTIDLECGSTTNSIARQEQVAFGP 127

Query: 120 PYAPILVVVGAPRSMKITGPADLAGKKVIATRGTTND---QELTKIAPPSTTITRFDDDA 176
            Y  I V     +S  I   A L GK V  T GTT+    +   K            D A
Sbjct: 128 TYFVINVTAAVKKSSNINTIAQLDGKTVSTTSGTTSVPLLKAYKKAGNAQVKEIYGKDHA 187

Query: 177 TSMTAMVSGQADIWVTSPMLL--KVVNEKNPMRDIENKLTLKANLLAVGLRKGEPRLKEK 234
            +   M   +A  +V   +LL  ++ N K P        +L+    ++ LRKG+P+ K  
Sbjct: 188 EAFLLMADDRAAAFVMDDILLAGQIANAKRPGDYKILPESLRQEPYSMMLRKGDPQFKAL 247

Query: 235 IDGWIRAKLGNGQLNAIYKKYHHAELPPEILN 266
           +D  I A + +G+++ IY K+    +PP+ LN
Sbjct: 248 VDKSITAVMQSGEIDKIYAKWFTTPIPPKGLN 279


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 442,997
Number of extensions: 16417
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 189
Effective length of database: 736,747
Effective search space: 139245183
Effective search space used: 139245183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)