BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0216.p
         (391 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096001|ref|YP_001101076.1| cardiolipin synthase 2 [Hermini...   449   e-127
gi|134094939|ref|YP_001100014.1| putative phospholipase D family...   147   7e-37

>gi|134096001|ref|YP_001101076.1| cardiolipin synthase 2
           [Herminiimonas arsenicoxydans]
          Length = 388

 Score =  449 bits (1154), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/387 (57%), Positives = 273/387 (70%)

Query: 5   LRHLTFTDGNQIALLHSGAGFYPALINAIETARVEIYLETYIFSLDETGLLVCEALQRAA 64
           +R ++F   N I LL+ GA ++PALI A + A+ EIYLETYIF+ DET   V  AL RAA
Sbjct: 1   MRSVSFVGQNDIQLLYCGAEYFPALIEAFDAAKSEIYLETYIFAADETADAVKAALVRAA 60

Query: 65  GRGVVVYVINDWLGTGRENTKKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA 124
            RGV+V V+ DW+GTG   +K L     AAGV +RSFNPWF RG+AR HRKLCVVDR  A
Sbjct: 61  QRGVIVNVMTDWVGTGNAQSKVLQRDFQAAGVAYRSFNPWFVRGIARMHRKLCVVDRVAA 120

Query: 125 FVGGLNINDDMVSDRDHVTPLPAPRWDFAVSIIGPLVQEVYREVQAQWLRVGHMKLKARW 184
           F+GGLNI DDM +D D    LPAPRWDF V I GPLV  ++ E+   W+R+G++  + RW
Sbjct: 121 FLGGLNIVDDMRNDDDPRILLPAPRWDFGVRISGPLVASIHWEMAVHWVRLGNLSWRTRW 180

Query: 185 RNFKRLRHGHPGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARETAFLANPYFAPGR 244
             ++      P        A LVVRDN  NRRTIQ AYL+ALG ARE+A LANPYFAPGR
Sbjct: 181 ATYREQHRRRPTDARVAMVAGLVVRDNLHNRRTIQNAYLKALGGARESAMLANPYFAPGR 240

Query: 245 KMRRALEEAALRGVKVTLLLGVGQFVMQDAVAHSFYPKLLRAGVRIVEYTHTELHAKVAV 304
           K+R+ L  AALRGV VTLLLGVGQ+  QD +A SFYPKLL+ GV+IVEY  T+LH KVAV
Sbjct: 241 KLRKGLSSAALRGVDVTLLLGVGQYRFQDVIARSFYPKLLKCGVKIVEYRKTQLHGKVAV 300

Query: 305 IDDKWSTVGSSNYDGLSLFVNQEANVVIQDAAFAGYLRQEIEAGAAHGRVVHLADFLHVP 364
           +DD W+T+GSSNYDG SLFVNQEANVV+ DA FA  LR  IE G A G  V L++F  +P
Sbjct: 301 VDDNWATIGSSNYDGFSLFVNQEANVVVLDADFAKKLRAHIEHGVADGVPVDLSEFDKIP 360

Query: 365 WYKRAAYGAAFLLYRTVIHIITLGKDA 391
            YKR  Y  A+ +Y++++ +IT GK A
Sbjct: 361 LYKRIFYRFAYQVYKSMLRLITWGKSA 387


>gi|134094939|ref|YP_001100014.1| putative phospholipase D family
           protein [Herminiimonas arsenicoxydans]
          Length = 463

 Score =  147 bits (372), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 167/368 (45%), Gaps = 21/368 (5%)

Query: 13  GNQIALLHSGAGFYPALINAIETARVEIYLETYIFSLDETGLLVCEALQRAAGRGVVVYV 72
           GN++ LL  G     A+I AI  AR  I LETYIF  +  G    + L +    GV V V
Sbjct: 92  GNKLTLLSDGPQTMSAMIAAIRNARDHINLETYIFGDEGLGEEFADLLIQKQHEGVQVNV 151

Query: 73  INDWLGTGRENTKKLHLALSAAGVQHRSFNPW--FRRGVA-----RSHRKLCVVDRQVAF 125
           I D +G+ +   +     L   G+    +NP   F+R ++     R HRK+ +VD  +AF
Sbjct: 152 IYDSIGSIKSKPEFFQ-RLRDGGINLLEYNPVNPFKRMISWRLNNRDHRKILIVDGMIAF 210

Query: 126 VGGLNINDDMVSD---RDHVTPLPAPRW-DFAVSIIGPLVQEVYREVQAQWLRVGHMKLK 181
            GG+NI DD  S    R          W D  + + GP V          W+      L 
Sbjct: 211 TGGINITDDYSSGSLFRSRTRNRSNLGWRDTHIQVEGPAVASFQWLFMQTWVSQKTDDLA 270

Query: 182 ARWRNFKRLRHGHPGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARETAFLANPYFA 241
           AR + F  L+     PV D+     V+         I +AY+ A+  A+ +  + N YF 
Sbjct: 271 AR-KYFPPLK-----PVGDKI--VRVIASTPDGDYEIYKAYILAMQEAKISIHITNSYFV 322

Query: 242 PGRKMRRALEEAALRGVKVTLLL-GVGQFVMQDAVAHSFYPKLLRAGVRIVEYTHTELHA 300
           P  +M  AL +AA RG+ V ++  GV    +      SFY +LL +GVRI E   + LHA
Sbjct: 323 PDVQMIEALTKAAQRGLDVKIVFPGVSDTGLVMHAGRSFYSQLLASGVRIFELQASVLHA 382

Query: 301 KVAVIDDKWSTVGSSNYDGLSLFVNQEANVVIQDAAFAGYLRQEIEAGAAHGRVVHLADF 360
           K AVID  WSTVGS+N D  S   N E N++  D  F   +         +   V  A +
Sbjct: 383 KTAVIDGYWSTVGSTNLDMRSFLHNSEVNLIALDQDFGSVMENAFNEDIKNSIEVTSATW 442

Query: 361 LHVPWYKR 368
              P+  R
Sbjct: 443 EQRPFSDR 450


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 769,881
Number of extensions: 31738
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 307
Effective length of database: 723,567
Effective search space: 222135069
Effective search space used: 222135069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)