BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0215.p
         (265 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096002|ref|YP_001101077.1| DNase [Herminiimonas arsenicoxy...   362   e-101

>gi|134096002|ref|YP_001101077.1| DNase [Herminiimonas
           arsenicoxydans]
          Length = 264

 Score =  362 bits (928), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/264 (65%), Positives = 204/264 (77%), Gaps = 1/264 (0%)

Query: 1   MKLRVATYNIHKGVTSFAGRPRILALKQALAQLDPDILFLQEVQGRHDLNALRHASNWPQ 60
           MKLR+ TYNIHKGV+SF  RPRI ALKQA+  +  D+LFLQEVQGRHDL+AL+HA++WP+
Sbjct: 1   MKLRITTYNIHKGVSSFGARPRIHALKQAINAMQSDVLFLQEVQGRHDLHALKHATDWPE 60

Query: 61  QGQHEFLAGDTHHAAYGMNAVYDHGHHGNALISRFEIASIRNQDVSDHAYESRGILHCVV 120
             Q +FLAGD+H  AYGMNAVYDHGHHGNAL+S F I S RNQ++SDH YESRGILHCVV
Sbjct: 61  LSQQDFLAGDSHQCAYGMNAVYDHGHHGNALLSCFPILSSRNQNISDHKYESRGILHCVV 120

Query: 121 PVEGVEVHCYVIHLGLFANGRRRQTDALIQAVSTSSPPDAPLLIAGDFNDWTNQLSRTLY 180
                EVHC+VIHLGLFA  R+RQT ALI+AVS S+   AP++IAGDFNDW N+LS  L 
Sbjct: 121 RAPEAEVHCFVIHLGLFAGSRKRQTAALIEAVSASAESGAPIIIAGDFNDWGNRLSEELR 180

Query: 181 QNLGVVEVFDQPQPTARGVMQGLRRLGGLSAPIRPARTFPAMMPWLRLDRIYVRGFRVEM 240
             LGV EVFD    + RG    LR+L G    I+PARTFPA MP+L+LDRIYVRGF+VE 
Sbjct: 181 DTLGVTEVFD-ANLSRRGFGTYLRQLSGRGTKIQPARTFPAAMPFLQLDRIYVRGFKVES 239

Query: 241 AQVLKDGPWARLSDHAPIVTELQL 264
           A+VL    W +LSDHAPIV  LQL
Sbjct: 240 AEVLHGAMWGKLSDHAPIVANLQL 263


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 535,642
Number of extensions: 22456
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 185
Effective length of database: 736,747
Effective search space: 136298195
Effective search space used: 136298195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)