BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0212.p (601 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096004|ref|YP_001101079.1| aspartyl-tRNA synthetase [Hermi... 1143 0.0 gi|134095413|ref|YP_001100488.1| lysyl-tRNA synthetase [Herminii... 70 3e-13 >gi|134096004|ref|YP_001101079.1| aspartyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 599 Score = 1143 bits (2956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/599 (90%), Positives = 567/599 (94%) Query: 3 MRTQYCGLTTEALLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRADVFKNA 62 MRTQYCGLT+EALL QTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDR DVFK A Sbjct: 1 MRTQYCGLTSEALLDQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRVDVFKAA 60 Query: 63 ESVRNEFCLRITGLVRNRPEGTTNANLKSGKIEVLCHELEVLNPSVTPPFQLDDDSLSET 122 E+VRNEFCLRITG+VR+RPEGTTN+NL SGKIEVL HELEVLNPSVTPPFQLDDD+LSET Sbjct: 61 EAVRNEFCLRITGIVRHRPEGTTNSNLTSGKIEVLAHELEVLNPSVTPPFQLDDDNLSET 120 Query: 123 TRLTHRVLDLRRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP 182 TRLTHRVLDLRRPQMQNNLRLRYKV MEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP Sbjct: 121 TRLTHRVLDLRRPQMQNNLRLRYKVTMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP 180 Query: 183 SRVNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFL 242 SRVNAG FFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSF+ Sbjct: 181 SRVNAGHFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFM 240 Query: 243 NEQEIRDLFEGMIRLVFKNALDIDLPNPFPVMDFATAMGKYGSDKPDMRVKLEFTELTDV 302 NEQEIRDLFEGMIRLVFKN L+++LPNPFPVMD+ATAMG YGSDKPDMRVKLEFT+LT + Sbjct: 241 NEQEIRDLFEGMIRLVFKNCLNVELPNPFPVMDYATAMGMYGSDKPDMRVKLEFTDLTSI 300 Query: 303 MKDVDFKVFSGAANSEGGRVVGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA 362 MKDV+FKVFSGAAN E GRVVGLRVPGG MPRSEIDAYTQFVAIYGAKGLAYIKVNEKA Sbjct: 301 MKDVEFKVFSGAANMENGRVVGLRVPGGGAMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA 360 Query: 363 KGRDGLQSPIVKNIHDAALNAIIEKTGAQDGDLIFFGADKAKVVNDAIGALRVKIGHSEF 422 KGRDGLQSPIVKNIHD AL IIE TGAQDGDLIFFGADKAKVVNDAIGALRVK+GHS+F Sbjct: 361 KGRDGLQSPIVKNIHDEALAKIIEATGAQDGDLIFFGADKAKVVNDAIGALRVKVGHSDF 420 Query: 423 GKKNGLFDDEWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIAKA 482 GKKNGLFDDEWRPLWVVDFPMFEYDED QRW A HHPFT+PKDGHED + TNPG ++KA Sbjct: 421 GKKNGLFDDEWRPLWVVDFPMFEYDEDSQRWSATHHPFTAPKDGHEDLMETNPGKCLSKA 480 Query: 483 YDMVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEARLKFGFLLDALQYGAPPHGGIAF 542 YDMVLNGWELGGGSVRIHRA+VQSKVFRALKI EEA+LKFGFLLDALQYGAPPHGG+AF Sbjct: 481 YDMVLNGWELGGGSVRIHRAEVQSKVFRALKISAEEAQLKFGFLLDALQYGAPPHGGLAF 540 Query: 543 GLDRLVTMMAGAESIRDVIAFPKTQRAQCLLTHAPSEVDEKQLRELHIRLRNTEPAVKA 601 GLDR+VTMM GAESIRDVIAFPKTQRAQCLLT APSEVDEKQLRELHIRLRN EP VK Sbjct: 541 GLDRIVTMMTGAESIRDVIAFPKTQRAQCLLTQAPSEVDEKQLRELHIRLRNVEPVVKG 599 >gi|134095413|ref|YP_001100488.1| lysyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 511 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%) Query: 90 KSGKIEVLCHELEVLNPSVTPPFQLDDDSLSETTRLTHRVLDL-RRPQMQNNLRLRYKVA 148 K+ ++ + EL ++ S+ P + T+ R +DL + + R Sbjct: 138 KTDELTIKVSELRLITKSLRPLPDKFHGLADQETKYRQRYVDLIMNEDTRRTFKARTAAI 197 Query: 149 MEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVPSRVNA--GEFFALPQSPQLFKQLLMV 206 +R+F++ F+++ETPML + P GA + NA E F L +P+L+ + L+V Sbjct: 198 SSIRRFMERNDFMEVETPML-HTIPGGAAAKPFTTHHNALDMEMF-LRIAPELYLKRLVV 255 Query: 207 ANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFLNEQEIRDLFEGMIRLVFKNA---- 262 FDR ++I + FR+E + PEFT ++ ++ + + + D E +IR +A Sbjct: 256 GGFDRVFEINRNFRNEGVSIRHNPEFTMMEFYAAYTDYKWLMDFTEAVIRQAAIDAHGTA 315 Query: 263 ------LDIDLPNPFPVMDFATAMGKYG 284 ++DL PF + A+ K+ Sbjct: 316 TLTYGGRELDLAKPFHRLTIVGAINKFA 343 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 25/140 (17%) Query: 433 WRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIAKAYDMVLNGWEL 492 W P +++D+P+ SP D + A I + +++ + G E+ Sbjct: 391 WEPTYIIDYPVE----------------VSPLARASDTV-----AGITERFELFMVGREI 429 Query: 493 GGGSVRIHRADVQSKVFRAL----KIDDEEARLKFGFLLDALQYGAPPHGGIAFGLDRLV 548 G ++ A+ Q+ F+A DEEA + AL+YG PP GG G+DRL+ Sbjct: 430 ANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPTGGCGIGIDRLM 489 Query: 549 TMMAGAESIRDVIAFPKTQR 568 ++ + +IRDV+ FP +R Sbjct: 490 MIITDSPNIRDVLLFPHLRR 509 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,134,282 Number of extensions: 47462 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 3 Length of query: 601 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 514 Effective length of database: 713,682 Effective search space: 366832548 Effective search space used: 366832548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)