BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0205.p
         (430 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096284|ref|YP_001101359.1| diaminopimelate decarboxylase [...   693   0.0  

>gi|134096284|ref|YP_001101359.1| diaminopimelate decarboxylase
           [Herminiimonas arsenicoxydans]
          Length = 427

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/429 (77%), Positives = 376/429 (87%), Gaps = 3/429 (0%)

Query: 1   MSHFSYRNGALHAEQVSLQALAEQFGTPLYVYSKAALVENFSAYANACRTAGRADGAKGG 60
           MSHFSY++G L AE   L  +A QFG+P Y+YSKAALVENFS+YA+AC+  GR D     
Sbjct: 1   MSHFSYQDGVLCAEHTPLTQIARQFGSPTYIYSKAALVENFSSYADACKKHGRTDDT--- 57

Query: 61  ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSAGELLRVVAAGGDARKVIFSGVGKGRDEMK 120
           ALVCYSVKSNSNLAVL LLGKLGSGFDIVS GELLRV+AAGG  RKVIFSGVGK R+EM+
Sbjct: 58  ALVCYSVKSNSNLAVLQLLGKLGSGFDIVSGGELLRVLAAGGSPRKVIFSGVGKSREEMQ 117

Query: 121 LALEHDILCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180
           LAL HDILCFNVESIPE+ RLNEVAG +GKRA +SLRVNPNVDAKTHPYISTGLK+NKFG
Sbjct: 118 LALSHDILCFNVESIPELHRLNEVAGEMGKRASVSLRVNPNVDAKTHPYISTGLKDNKFG 177

Query: 181 VAYEDALNCYRTAAALPHIEVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240
           VAYEDAL  YR A+ALP+I VVGIDCHIGSQLLDD+PLLEA+DK+I+++DAL AEGI IH
Sbjct: 178 VAYEDALTTYRVASALPNISVVGIDCHIGSQLLDDAPLLEAVDKLIELIDALAAEGIVIH 237

Query: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGL 300
           HLDIGGGIGI YD+++PVA+GDYLARVFA+VDAWRAK + G PI+V+FEPGRS+VGNAG+
Sbjct: 238 HLDIGGGIGINYDNDKPVAVGDYLARVFAKVDAWRAKNHAGAPIKVLFEPGRSIVGNAGI 297

Query: 301 LLTEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCES 360
           LLTEVQY+KHGE KNFA+VDAAMNDLMRPAMYEAWHGVQ V +     + YDVVGPVCES
Sbjct: 298 LLTEVQYIKHGETKNFAIVDAAMNDLMRPAMYEAWHGVQPVLQRHVAAQTYDVVGPVCES 357

Query: 361 GDWLARARELAIGEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGQQAHLVRARENPA 420
           GDWLAR+RELAI EGDLLA+MSAGAYGMTM+SNYNTRGRAAEV+VDG   HL+R RE  +
Sbjct: 358 GDWLARSRELAIQEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVMVDGATVHLIRKRELAS 417

Query: 421 DLFALEKIV 429
           DLFALE ++
Sbjct: 418 DLFALETLL 426


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 804,097
Number of extensions: 33299
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 346
Effective length of database: 723,567
Effective search space: 250354182
Effective search space used: 250354182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)