BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0202.p (713 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 243 3e-65 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 149 4e-37 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 102 5e-23 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 60 3e-10 gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 57 4e-09 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 243 bits (620), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 216/767 (28%), Positives = 347/767 (45%), Gaps = 85/767 (11%) Query: 6 HPLALAALATCSVT--------SLAHAQQAASALPTIEVSGARANDGYVAPTAVSGTKSE 57 HP A + + +V + +AQQ S LP +EV G + Y A T VS K Sbjct: 9 HPAARRSSCSTAVAMAFVVLPGTTVYAQQVTSVLPEVEVHGT--TESYKADT-VSSPKFT 65 Query: 58 APLRDVPQTINVVPAQVIRDQNAMSMQDVLKNVPGLG-LSTGDGQR----DQVFIRGFTA 112 PL + QTI V+ ++++ Q ++ + L+N PG+G S G+ D +++RGF Sbjct: 66 QPLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIYMRGFDT 125 Query: 113 IGDQFVDGFRDDALYFRDLSNVDHVEVIKGPAAVLYGRGSSGGLINRVSKKPGDDVSDIG 172 FVDG RD RD+ N++ +EV KGPA GRGS G IN +K+P + G Sbjct: 126 SSSIFVDGVRDLGSISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMKEAYSG 185 Query: 173 -LSANSTAGRRAELDLGRGAG-DGILSWRLTGAVERGDGYRAQQFI--DRTALAPSIALR 228 +S S +R DL + DG ++R+ ++ G + + DR +A + A Sbjct: 186 SVSVGSGDYKRITADLNKPLDFDGGAAFRIN-LLKDDSGVAGRDIVKNDRQGIAAAFAFG 244 Query: 229 FSADTQLLLQADYLEDRRVMDFGIPSY---------------RGRPVTVDPGTYF--GAR 271 +T+ L +++ + D G+P+ PV P F GA Sbjct: 245 LKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPARPFLNGAS 304 Query: 272 NARDA-------DFVQARVASTTATFTHRFNQEFSLRNALRYYDYHLNRNSTNINGN--- 321 + DF TA H + + L+N R+ N T G+ Sbjct: 305 RVNSSNFYGTVGDFDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGFMGSAPN 364 Query: 322 ------VNETTATMALNHARLVRDENGWFNQSELTQKLTLGPTKHEILYGVEVGSQSKDA 375 + TT T+A + + + NQ+ LT K G KH ++ GVE+ S+ + + Sbjct: 365 LLTPNPADPTTWTLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHSLVTGVELSSEKQRS 424 Query: 376 ATYGGVPVAGSSSGLPAVSIF--NPVLPVVNPNRLGAAALTYGTYDTFAGYLQDSMSLSP 433 Y G+ + A +++ NP L N +G + G +T + YL D++ LSP Sbjct: 425 LGYAGLGT------ISAANLYNPNPYLVRTGYNPVGNGTNSEGRTNTLSVYLFDTLELSP 478 Query: 434 QWKALMGLRYDSFRQQSRLLAANGAPSSLARTDTAYSPRAGLVWQPSQTQSYYLSWSRSF 493 QW+ G+R D + + N ++L ++ T + + G +++P++ S Y+S++ S Sbjct: 479 QWQINGGVRVDHYDTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSK 538 Query: 494 Q-PSGENFALATN-----NADLAPEQTRNTEVGAKYDFWEGRASATLAVFRLERDNIKST 547 Q P G NFAL++N N + P++TR E+GAK+D + R T A++R + N Sbjct: 539 QPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEG 598 Query: 548 LPNNTIIPVGKQRTDGAELTFSADLKQGWKLLAGYAWLDAVITDSSSFDTSVTAAGSVPF 607 + GK+R +G EL ++ W++ AGY + T VTA V Sbjct: 599 NATDGFTQTGKKRVEGVELGVVGEITSAWQVSAGY----------TRMRTDVTAGAIVNQ 648 Query: 608 KGKNA-TLTPRHSANLWLTKELGDGFVVGAGANAVGARFANPGNTVTLPGYVTT----DA 662 G + + TP+ + W T +L GF +G GA V A V P +V + DA Sbjct: 649 DGTSGLSYTPKQAFTAWTTYKLPGGFTIGGGARFVDALHKPKDGAVGTPQFVESYWVYDA 708 Query: 663 MAAYRTAK-YEVQLNIGNLFNTGYIVSGHGSSPNLSLPGAPRSVALS 708 MA+Y +K +QLN+ NL + Y+ S + S + PG RS LS Sbjct: 709 MASYEVSKNVSLQLNLYNLADKDYVASINKSGYRYT-PGIERSARLS 754 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 183/727 (25%), Positives = 290/727 (39%), Gaps = 94/727 (12%) Query: 27 AASALPTIEVSGARAND-----GYVAPTAVSGTKSEAPLRDVPQTINVVPAQVIRDQNAM 81 A + LP + VSG + GY A + + TK++ L + Q + VV I DQ A Sbjct: 53 AVTTLPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGAT 112 Query: 82 SMQDVLKNVPGL-----GLSTGDGQRDQVFIRGFTAIGDQFVDGFRDDALYFR-----DL 131 ++QD L G+ GL D + D V +RG A D ++DG R Y+ D Sbjct: 113 NLQDALTYAAGVRSDAYGL---DSRTDSVLVRG--ASPDVYIDGLRQANDYYTSAARPDP 167 Query: 132 SNVDHVEVIKGPAAVLYGRGSSGGLINRVSKKPGDDVS-DIGLSANSTAGRRAELDL-GR 189 ++ +EV++GPAA+ YG+GS+GG++N VSK+P + ++G+ + ++ + D+ G Sbjct: 168 FTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGP 227 Query: 190 GAGDGILSWRLTGAVERGDGYRAQQFIDRTALAPSIALRFSADTQLLLQADYLEDRRVMD 249 D +RL D DRT +APS+ + + T L LQ Y DR Sbjct: 228 LTEDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTWKPNGVTSLTLQGLYQRDRTGST 287 Query: 250 FGIPSYRGRPVTVDPGTYFGAR-NARDADFVQARVASTTATFTHRFNQEFSLR------- 301 + G G +R D S F H+ N ++ R Sbjct: 288 SQFLPWAGMLTPNVNGMIPTSRFIGEPGDRYDTDRQSLGYLFEHQLNDNWTFRQNFRYAV 347 Query: 302 NALRYYDYHLNRNSTNINGNVNETTATMALNHARLVRDENGWFNQ-------SELTQKLT 354 N + Y+ ++ + ST+ + + A +N + R + + L KL Sbjct: 348 NEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQAKLQ 407 Query: 355 LGPTKHEILYGVEVGSQSKDAATYGGVPVAGSSSGLPAVSIFNPVLPVVNPNRLGAAALT 414 GP +H++L G++ +D S G+ + ++ PV N A Sbjct: 408 TGPLQHDLLAGLDYTRYQRDRQ---------SGFGMDTIDVYAPVYG--NGVVATLADDP 456 Query: 415 YGTYDTFAGYLQDSMSLSPQWKALMGLRYDSFRQQSRLLAANGAPSSLARTDTAYSPRAG 474 YLQD + + W GLR+D N S A + R G Sbjct: 457 QSVQRQIGLYLQDQIKIGKNWIVSAGLRHDRVN--------NALAGSEDEESRATTKRVG 508 Query: 475 LVWQPSQTQSYYLSWSRSFQPSGENFALATNNAD--LAPEQTRNTEVGAKYDFWEGRASA 532 +++ S Y+S+S SF P TN D P + E G KY G + Sbjct: 509 VMYLLENGWSPYVSYSESFTP-----VAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQF 563 Query: 533 TLAVFRLERDNIKSTLPNNTI--IPVGKQRTDGAELTFSADLKQGWKLLAGYAWLDAVIT 590 T A+++++ N +T P+N + I VG+ + G EL + A + +LA Y + D Sbjct: 564 TAAIWKIDEKNKSTTDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVLAHYNYTD---- 619 Query: 591 DSSSFDTSVTAAGSVPFKGKNATLTPRHSANLWLTKELG----DGFVVGAGANAVGARFA 646 D + PRH A W GF +GAGA + + F Sbjct: 620 ----LDEQLDEV-------------PRHQAAAWGKWRFSIGGVSGFALGAGARYMSS-FR 661 Query: 647 NPGNTVTLPGYVTTDAMAAYRTAKYEVQLNIGNLFNTGYIVSGHGSSPNLSLPGAPRSVA 706 + G T P DA+ ++ T + LN+ NL T + + S GA RS Sbjct: 662 D-GVAPTTPSVTLLDALLSWDTMNWRYALNVNNL--TDKVYNATCLSRGDCWYGARRSAV 718 Query: 707 LSLRYHM 713 L+ Y Sbjct: 719 LTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 165/710 (23%), Positives = 282/710 (39%), Gaps = 46/710 (6%) Query: 25 QQAASALPTIEVSGARANDGYVAPTAVSGTKSEAPLRDVPQTINVVPAQVIRDQNAMSMQ 84 + + + LP + V +DG +A A G S+APLR+ P +I+V+ + ++D++ S Sbjct: 28 ETSENVLPEVVVMSDSESDG-IARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSAT 86 Query: 85 DVLK-NVPGLGLSTGDGQRDQVFIRGFTA-IGDQF-VDGFRDDALYFRDLSNVDHVEVIK 141 D +K + G D IRGFT +G + DG A + N + EV+K Sbjct: 87 DAVKYDASVQNAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPMENKERFEVLK 146 Query: 142 GPAAVLYGRGSSGGLINRVSKKPGDD-VSDIGLSANSTAGRRAELDLGRGAGDGILSWRL 200 G A + G SSGG++N V K+P ++ + + L A+ +DLG + D +R+ Sbjct: 147 GLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGRSDDKRFGYRI 206 Query: 201 TGAVERGDGYRAQQFIDRTALAPSIALRFSADTQLLLQADYLEDRRVMDFGIPSYRGRPV 260 A Y +R ++ + R S L + DY ++ +P ++ Sbjct: 207 NAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQL---SVPGFQLLGP 263 Query: 261 TVDPGTYFGARNARDADFVQARVASTTATFTHRFNQEFSLR--NALRYYDYHLNRNSTN- 317 T A+ + V T +F E + + L+ + L R+ Sbjct: 264 AQRIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHTTLQANKFELRRDDAVA 323 Query: 318 -INGNVNE-----TTATMALNHARLVRDENG---WFNQSELTQKLTLGPTKHEILYGVEV 368 +G V E A N L RD + Q+ L K G KH++ G+ Sbjct: 324 LASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMSTQAMLQGKFNAGTIKHDLTLGMST 383 Query: 369 GSQSKDAATYGGVPVAGSSSGLPAVSIFNPV-LPVVNPNRLGAAALTYGTYDTFAGYLQD 427 ++ + A + S P +NP+ L NP L + + ++QD Sbjct: 384 MNRRDNYANFLFESAGTGSIYYPK---YNPLTLGPTNPVSLRRKD------EERSVFVQD 434 Query: 428 SMSLSPQWKALMGLRYDSFRQQSRLLAANGAPSSLARTDTAY-SPRAGLVWQPSQTQSYY 486 ++L+ ++K G+RY Q+++ ++ G TD + P LV+ P S Y Sbjct: 435 VLTLNDKFKLHAGMRYTQL-QRTQFTSSGGL---FRHTDKDFLLPNVALVFSPQSNWSIY 490 Query: 487 LSWSRSFQPSGE-NFALATNNADLAPEQTRNTEVGAKYDFWEGRASATLAVFRLERDNIK 545 ++S+ +P E L L P ++R E+G K D + S A+F++ RDN Sbjct: 491 GTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQD-ISVAAALFQIHRDNNY 549 Query: 546 STLPNNTIIPVGKQRTDGAELTFSADLKQGWKLLAGYAWLDAVITDSSSFDTSVTAAGSV 605 ++ N + GK+ G EL+ + L A L A ++ G+V Sbjct: 550 TSGLN--YVTAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRIGNV 607 Query: 606 PFKGKNATLTPRHSANLWLTKELGDGFVVGAGANAVGARFANPGNTVTLPGYVTTDAMAA 665 P K+A + K + A A+ + V GY + A Sbjct: 608 PVL-KSAVFMDYTLPQMPALKLNAMWIYSSSKVFAPNAQISELNKKVD--GYHVLNVGAQ 664 Query: 666 YRT----AKYEVQLNIGNLFNTGYIVSGHGSSPNLSLPGAPRSVALSLRY 711 Y+T K + I N+F+ Y + +PGAPR LS ++ Sbjct: 665 YKTKVSGTKTTFRFGIDNVFDKFYWGDASNAYGGYLIPGAPRVFRLSAQF 714 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 44/227 (19%) Query: 6 HPLAL-AALATCSVTSLAHAQQAASALPTIEVSGARANDGYVAPTAVSGTKSEAPLRDVP 64 PLAL +ALAT + ++A + + P VS ++ E+ + P Sbjct: 14 KPLALVSALATLTFPAVAQVETGQQ----------------LTPVTVSASRFESA--EAP 55 Query: 65 QTINVVPAQVIRDQNAMSMQDVLKNVPGL-GLSTGDGQRDQVF-IRGFTAIGDQ----FV 118 V+ AQ IRD A S+ + ++ + G+ G ++ G D +RGF + +Q FV Sbjct: 56 IGATVITAQQIRDSGAGSINEAIRKIAGVFGRASQSGTSDSSLDLRGFGSSSNQNVAIFV 115 Query: 119 DGFRDDALYFR-------DLSNVDHVEVIKGPAAVLYGRGSSGGLINRVSKK------PG 165 DG R + + +V+ +EV++G ++VLYG G++GG I ++K+ G Sbjct: 116 DGIRISENELQPAVMSAIAIESVERIEVVRGGSSVLYGEGATGGTIQIITKRGSTKGTHG 175 Query: 166 DDVSDIGLSANSTAGRRAELDLGRGAGDGILSWRLTGAVERGDGYRA 212 V++IG + RA L+ G DG GA+ R D YRA Sbjct: 176 SVVAEIGNRGHEEI--RASLNAG---WDGFSIDANLGAL-RTDNYRA 216 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 34/176 (19%) Query: 7 PLALAALATCSVTSLAHAQQAASALPTIEVSGARANDGYVAPTAVSGTKSEAPLRDVPQT 66 PLA+ A S AHAQ AA E+ VS + E +++ P + Sbjct: 35 PLAVLAATAGS----AHAQDAAPEHQLKEI-------------VVSASGFEQEIKNAPAS 77 Query: 67 INVVPAQVIRDQNAMSMQDVLKNVPGLGLSTGDGQRDQVFIR------GFTAI------- 113 I V+ + ++ S+ + L NV G+ +++ G+ + I+ +T I Sbjct: 78 ITVITREELQSNRVNSIAEALSNVEGVDVTSSVGKTGGLSIQMRGLGSAYTLILIDGRRQ 137 Query: 114 ---GDQFVDGFRDDALYFRDL-SNVDHVEVIKGPAAVLYGRGSSGGLINRVSKKPG 165 G+ +GF D A F S ++ +EVI+GP A LYG + GG+IN +++K G Sbjct: 138 NPAGNVVPNGFGDSASTFMPPPSAIERIEVIRGPMATLYGSDAIGGVINIITRKVG 193 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,337,097 Number of extensions: 57293 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 7 Length of query: 713 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 625 Effective length of database: 710,387 Effective search space: 443991875 Effective search space used: 443991875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)