BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0200.p (391 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 165 3e-42 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 135 3e-33 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 103 2e-23 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 92 5e-20 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 165 bits (418), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 152/406 (37%), Positives = 205/406 (50%), Gaps = 64/406 (15%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQG 60 MKKSLLALAVLGAFAGAA AQSSVT+YGIVD G+ Q T G + SG Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDMGITSQD---TGAGANDRLNGVTSGNQSA 57 Query: 61 SRIGFKGVEDLGGGLSAVFNLEAGFSNDTGALD--DSKTSNTLFRRKSVVGLTGGFGSVL 118 SRIGFKG EDLG GL A F LE + DTG L D KT+ F R + VGL+G FG+V Sbjct: 58 SRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTA---FNRFATVGLSGNFGAVN 114 Query: 119 LGRQTDFADTISAYTAVNDF--GGWVSNSGSGL--DRLQGT--RTNNSISYTTANLNGFT 172 LGRQ + AY A++ F GG ++ + L+G R +NSI YT+ + +GF Sbjct: 115 LGRQV--SAIKDAYDAIDPFGDGGTIAPISAIFFNAALKGDNGRISNSIKYTSNSYSGFK 172 Query: 173 GNLMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTASDTSLLGASGASSV 232 Y FGE AG+T A ++G+ Y NGPL + Y + D S GA G V Sbjct: 173 FGAHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGY-------MSGDDSTAGAPGFKPV 225 Query: 233 GTTSTLAGDTAQKVLNVAASYQFGPARVYGNYSRVKQDLNTQANLTAIGVGSLTSLTNRT 292 ++ K+ + A+Y FG A+++ Y K N+ Sbjct: 226 -------KNSKDKMTFLGATYDFGVAKLHAAYGDSK---------------------NQP 257 Query: 293 LA--RSNKADIYEIGTAYSLSPSLKLLAA--VDHTRANFDGV-TNKTKLTQVSLGTDYWL 347 +A NK Y +G + + + ++A+ V+ TR F GV N + + + L Sbjct: 258 VAGNVDNKYRNYMLGVSAKVGAAGSIMASYTVNDTRT-FGGVKANDRDSKRAGIMYAHDL 316 Query: 348 SKRTDLYAFLAYTKASDMA--NPGVSDSTGTDGNQGAVAVGIRHKF 391 SKRT+LYA ++T A N V+D +G+ AVG+RHKF Sbjct: 317 SKRTNLYAGYSHTSNDKNAKLNALVADQSGS-----MFAVGVRHKF 357 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 134/398 (33%), Positives = 186/398 (46%), Gaps = 52/398 (13%) Query: 18 AHAQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQGSRIGFKGVEDLGGGLSA 77 A AQ+ VTIYGI D +VY S GG + + SG + GSRIGFKG EDLGGG A Sbjct: 23 AGAQNGVTIYGIADVAMVYSSN----QGGASNTY-MRSGNLAGSRIGFKGTEDLGGGTQA 77 Query: 78 VFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTG-GFGSVLLGRQ-TDFADTISAYTAV 135 +F LE+GF+ DTG + +S+TLF R++ VG+ +G++ GRQ T + + Sbjct: 78 IFQLESGFNLDTGEM---SSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIGPT 134 Query: 136 NDFGGWVSNSGSGLDRLQGT-RTNNSISYTTANLNGFTGNLMYGFGETAGQTSAGQSFGI 194 N G +D L T R+NNSI+YT+ NG + + GFGETAG +G++ Sbjct: 135 NSLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISA 194 Query: 195 GGKYD--NGPLGLG---INYYQSKAGSTASDTSLLGASGASSVGTTSTLAGDTAQKVLNV 249 KYD N LG +N + G + + S A+ +S L+ D+AQ L Sbjct: 195 AIKYDINNWNFALGYQRLNNSNNPGGVWSPNAS---ANFNTSPVNNGYLSADSAQ-YLAG 250 Query: 250 AASYQFGPARVYGNYSRVKQDLNTQANLTAIGVGSLTSLTNRTLARSNKADIYEIGTAYS 309 AA Y G V N SRV+ N N + D + T Y Sbjct: 251 AARYTMGKVIVGANASRVEYRPN----------------GNSLFTQKATFDTLGLLTGYQ 294 Query: 310 LSPSLKLLAAVDHTRAN-FDGVTNKTKLTQVSLGTDYWLSKRTDLYAFLAYTKASD---- 364 ++P + +T+ +G+++ K Q++L Y SKRT +Y AY A Sbjct: 295 MTPVFFVSVGYSYTKEKAANGISDPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLG 354 Query: 365 -------MANPGVSDS---TGTDG-NQGAVAVGIRHKF 391 A V DS T +DG NQ VGIRH F Sbjct: 355 LGGSGPVRAVAVVGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 128/418 (30%), Positives = 186/418 (44%), Gaps = 85/418 (20%) Query: 14 FAGAAHAQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQGSRIGFKGVEDLGG 73 F+ A AQSSV G VD + + +G G+K +NS ++ S G KG E+LGG Sbjct: 22 FSLNALAQSSVQFVGTVD---AFAGSLKN-SGDAGSKSVVNSSGMETSWWGVKGTENLGG 77 Query: 74 GLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTGGFGSVLLGRQTDFADTISAYT 133 GL A F L + F DTGA S+T+F R + VGL+G FG V +GR D A Sbjct: 78 GLQAQFALSSFFRPDTGA-QGRFDSDTMFSRDAHVGLSGSFGRVSVGR--DLAPNFIPTL 134 Query: 134 AVNDFGGWV--------SNSGSGLDRLQ--------GTRTNNSISYTTANLNGFTGNLMY 177 + FGG + + SG R Q T +N I Y L GFT +L + Sbjct: 135 TFSPFGGSFAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFF 194 Query: 178 GFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTASDTSLLGASGA-------S 230 FGE AG+ ++G Y+ GPL G Y+QS + D+ G S Sbjct: 195 QFGEQAGKPGK-NNYGANTMYEQGPLSFGA-YFQSVKVNNPLDSVTSGDSRVFTFTPYNQ 252 Query: 231 SVGTTSTLAGDTAQKVLNVAASYQFGPARVYG--NYSRVKQDLNTQANLTAIGVGSLTSL 288 + G T TLA + V +Y +++G NYS Sbjct: 253 ATGATYTLAA-SRNDTWFVGGAYDLQFMKLFGTLNYS----------------------- 288 Query: 289 TNRTLARSN------KADIYEIGTAYSLSPSLKLLA-AVDHTRANFD------GVTNKTK 335 TNR + +N K++ ++GT+ + L + A + +A+ D G K+ Sbjct: 289 TNRLIGIANDSQYDLKSNTVQLGTSVPVGKGSVLFSWARTNVKADGDFSAVLGGAGGKSS 348 Query: 336 LTQ--VSLGTDYWLSKRTDLYAFLAYTKASDMANPGVSDSTGTDGNQGAVAVGIRHKF 391 + + SLG DY+LSKRTD+Y+ ++Y K +D STG ++ VGIR +F Sbjct: 349 IIRNTASLGYDYFLSKRTDVYSVVSYDKLTD-------QSTGI-----SLGVGIRQRF 394 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 94/331 (28%), Positives = 143/331 (43%), Gaps = 53/331 (16%) Query: 20 AQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQGSRIGFKGVEDLGGGLSAVF 79 A SS+++YG +D+G+ + + TA+GG+ TK N G +R+G KG+E+LGGGL+ F Sbjct: 30 APSSISMYGTIDSGIRHVTNT-TASGGSTTKLGSN-GEYYNNRLGIKGMENLGGGLNMHF 87 Query: 80 NLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTGGFGSVLLGRQTDFA-DTISAYTAVN-- 136 +LE+GF+ TG LD+ +N LF R S +G+ G FGS+ GRQ A + AY Sbjct: 88 HLESGFNTGTGELDNK--ANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPFQYR 145 Query: 137 -------------DFGGWVSNSGSGLDRLQGTRTNNSISYTTANLNGFTGNLMYGFGETA 183 + G VS +D G R +N Y FT + Y GE Sbjct: 146 YVHIIPLAGAVAGNLDGRVSRPFGTVD---GPRFSNGAQY-FGKFGSFTASAEYIMGEVP 201 Query: 184 GQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTASDTSLLGASGASSVGTTSTLAGDTA 243 G + +G Y++G +G G+ +G AS Sbjct: 202 GSNRNQAAKAVGLVYNDGTFTVG--------GAYTRQNPNIGTVAASDY---------RE 244 Query: 244 QKVLNVAASYQFGPARVYGNYSRVKQDLNTQANLTAIG-------VGSLTSLTNRTLARS 296 Q Y+ R+ G Y + + +QA +G SLT+ RT + Sbjct: 245 QNQTTFGGGYKIDALRITGGYLKTTTAITSQAKNIWLGARYDFTPAASLTAGYYRTTLET 304 Query: 297 NKADIYE-----IGTAYSLSPSLKLLAAVDH 322 +++I +G Y+LSP L A +D Sbjct: 305 AQSEIARRNLLIVGATYALSPRTSLYADIDQ 335 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.130 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 654,789 Number of extensions: 26930 Number of successful extensions: 81 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 67 Number of HSP's successfully gapped: 4 Length of query: 391 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 307 Effective length of database: 723,567 Effective search space: 222135069 Effective search space used: 222135069 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)