BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0198.p
         (458 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-bind...   772   0.0  
gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-bind...    94   1e-20

>gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-binding
           subunit HslU [Herminiimonas arsenicoxydans]
          Length = 445

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/446 (85%), Positives = 407/446 (91%), Gaps = 1/446 (0%)

Query: 13  MTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGK 72
           MTP+EIVSELDKHVVGQ  AKRAVAIALRNRWRRQQ+ EPLRHEITPKNILMIGPTGVGK
Sbjct: 1   MTPQEIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60

Query: 73  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRTRA 132
           TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIKQTRE ETRKVR RA
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAETRKVRARA 120

Query: 133 EDAAEDRILDVLLPPARDFGFTPDGSHAGGEKDDKNTTRQTFRKRLREGALDDREIELEL 192
           EDAAEDR++D+L+PPARDFGF P  +      +D N TRQTFRKRLREG LDD EIE+EL
Sbjct: 121 EDAAEDRVIDILVPPARDFGFHPSATSTSDHSND-NATRQTFRKRLREGLLDDNEIEIEL 179

Query: 193 NDAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEE 252
            +A P+MEIMAPPGMEEMTEQIKSMFSG G  RKKARKIKI+EAMKLLIEEEA KLVNE+
Sbjct: 180 AEAGPTMEIMAPPGMEEMTEQIKSMFSGAGGNRKKARKIKIREAMKLLIEEEAGKLVNED 239

Query: 253 ELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYGMI 312
           ELKQKAI NVEQNGIVFLDEIDKIA RS+ G A+VSRAGVQRDLLPLVEGTTVNTKYGMI
Sbjct: 240 ELKQKAITNVEQNGIVFLDEIDKIANRSEQGGAEVSRAGVQRDLLPLVEGTTVNTKYGMI 299

Query: 313 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYEA 372
           KTDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSIADFERILTGTDACLTKQY+A
Sbjct: 300 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTKQYQA 359

Query: 373 LLATEGVKIAFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVEG 432
           LLATEGVKI FA  GIKR+AEI+++VNEKTENIGARRLYTVMEKLLEEISF+A E   + 
Sbjct: 360 LLATEGVKIEFAQDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSASENPDQT 419

Query: 433 LEIDADYVNERLGELAVDEDMSRYVL 458
           L IDA YVNERLG L+VDED+SRYVL
Sbjct: 420 LPIDAAYVNERLGALSVDEDLSRYVL 445


>gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding
           subunit ClpX [Herminiimonas arsenicoxydans]
          Length = 422

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 13/107 (12%)

Query: 14  TPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRH-------EITPKNILMIG 66
           TP+E+   LD++V+GQ  AKR +++A+ N ++R      L+H       E+   NIL++G
Sbjct: 67  TPQELCELLDQYVIGQNSAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVG 120

Query: 67  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLV 113
           PTG GKT +A+ LA+  D PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 121 PTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLL 167


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 776,664
Number of extensions: 30978
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 373
Effective length of database: 720,272
Effective search space: 268661456
Effective search space used: 268661456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)