BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0189.p (255 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 439 e-125 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 237 4e-64 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 179 1e-46 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 139 1e-34 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 138 3e-34 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 439 bits (1129), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/253 (85%), Positives = 230/253 (90%) Query: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSF 62 Q +L I +VSKRFGGLQAL V + I +GQIYGLIGPNGAGKTTFFNVITGLYQ D+GSF Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 63 ELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKA 122 ELAG+ YSPSAPH VAKAGIARTFQNIRLFGEMT LENVMVG HVRT Q +FGAVF HKA Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKA 127 Query: 123 ARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAA 182 AR EEAAIRA++ +LLDFVGI QFA RTARHLSYGDQRRLEIARALAT+PQLLALDEPAA Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 183 GMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQK 242 GMNATEKL LRELLVKI+AEGKTILLIEHDVKL+MGLC+RITVLDYGKPIAEGVPADVQK Sbjct: 188 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQK 247 Query: 243 NPAVIEAYLGAGH 255 NPAVIEAYLG H Sbjct: 248 NPAVIEAYLGGSH 260 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 237 bits (605), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 168/251 (66%) Query: 4 TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFE 63 T L+ +D++ FGGL A + V ++ G ++ +IGPNGAGK+TF N ++G Y+P +GS E Sbjct: 346 TCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIE 405 Query: 64 LAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAA 123 GQ + H++A+ G+ARTFQN LFG+MT LENV+VG R + +F + R + Sbjct: 406 FMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSY 465 Query: 124 RDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAAG 183 +E A+++ LL++VG+ +A+ AR+L +G QRRLEIARALA P+LL LDEPAAG Sbjct: 466 FHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAG 525 Query: 184 MNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKN 243 + E L +L+ + + T+LL+EH V ++M + + +TVLDYGK IA G A+V+ N Sbjct: 526 LTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSN 585 Query: 244 PAVIEAYLGAG 254 PAVIEAY G G Sbjct: 586 PAVIEAYFGTG 596 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/255 (41%), Positives = 157/255 (61%), Gaps = 4/255 (1%) Query: 2 SQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGS 61 + +L+ RD++ RFGGL AL+ + + I G++ GL+GPNG+GKTTFFNV+TGLY+ +GS Sbjct: 19 ATSLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGS 78 Query: 62 FELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHK 121 G+ P E+ ++G+ARTFQ RL +TV +N+++G + + +F +FR K Sbjct: 79 IIYQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRK 138 Query: 122 AARDEEAAIRAKSQQLLDFVGIGQFAK--RTARHLSYGDQRRLEIARALATEPQLLALDE 179 A R E A AK + LL A+ S D+RR+E+ RAL +EP+LL LDE Sbjct: 139 AFRAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDE 198 Query: 180 PAAGMNATEKLALRE--LLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVP 237 P+AGM E AL + L V+ + T++LIEH++ ++ + +R V +YGK IAEG Sbjct: 199 PSAGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTY 258 Query: 238 ADVQKNPAVIEAYLG 252 A++ +P V AYLG Sbjct: 259 AEITADPNVQTAYLG 273 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 15/241 (6%) Query: 6 LKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFELA 65 +++++++K+FG ALN V + G++ L+GP+G GKTT +I GL QPD G L Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 66 GQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAARD 125 G+ SA H V + + FQ+ LF MTV EN+ G VR A R Sbjct: 63 GE--DASARH-VRERQVGFVFQHYALFKHMTVFENIAFGLRVRP-----------AATRP 108 Query: 126 EEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAAGMN 185 E+ I+ K +LL+ V + A R LS G ++R+ +ARALA EP++L LDEP ++ Sbjct: 109 SESVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALD 168 Query: 186 ATEKLALRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 A + LR L ++ E T + + HD + + + ++I +++ G G P DV NP Sbjct: 169 AKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNP 228 Query: 245 A 245 A Sbjct: 229 A 229 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 11/257 (4%) Query: 2 SQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGS 61 + LL+ + +S+ +G AL+ V +++ RG+ ++GPNGAGKTT NV+TGL+QP TG+ Sbjct: 4 NDVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGN 63 Query: 62 FELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGC--HVRTKQNVFGAVFR 119 G + ++A G+AR FQ +F E+TV E + V ++ + N FG++F Sbjct: 64 VHFNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFG 123 Query: 120 HKAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDE 179 + D +R D G+ + L +G ++ L++A A A P+++ LDE Sbjct: 124 SRKVND--IVVRTA-----DAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDE 176 Query: 180 PAAGMNATEKLALRELLVKIQAEG--KTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVP 237 P AG++ +K + E L++ + I+L+EHD+ L+ RI + GK IA+ Sbjct: 177 PTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPR 236 Query: 238 ADVQKNPAVIEAYLGAG 254 + N +I +G G Sbjct: 237 DEFFANEEIISIVVGKG 253 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 484,706 Number of extensions: 20541 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 49 Length of query: 255 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 175 Effective length of database: 736,747 Effective search space: 128930725 Effective search space used: 128930725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)