BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0183.p
         (154 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...   112   9e-27
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    95   2e-21
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    80   5e-17

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  112 bits (280), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 90/153 (58%)

Query: 1   MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE 60
           M   D+  + +L  LQ+ GR+SNV+L+ RVNLSP  C  RV++L++ G I GYAA ++  
Sbjct: 1   MEKFDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAA 60

Query: 61  LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120
            L + +  F+ + + R       E +++++  PEI+EC+ ++G FDYL+K    D+ +  
Sbjct: 61  ALGLGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLS 120

Query: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153
            FL   L+Q+ GV    +   +EE+K    LP+
Sbjct: 121 SFLTDRLMQVPGVAGVRSMVCLEEIKPASPLPL 153


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 94.7 bits (234), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%)

Query: 4   LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63
           LDK+ +K+L  LQ D +I    LA +V++S   CL R+R +++AG I    A ++P  L 
Sbjct: 7   LDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 64  VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123
             +L F+EV L   + +   EF+  +   PE+M+C+ V+G +DY +   V DM+AY +F+
Sbjct: 67  YGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153
            +++     VR   +   M+  K   R+ +
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDTRIAL 156


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 80.1 bits (196), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 77/150 (51%)

Query: 4   LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63
           LD++ ++IL  LQ D   +N DLA  V+ SP  CL RV++L +AG I    A ++P+ + 
Sbjct: 8   LDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKIG 67

Query: 64  VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123
             L   +E+ LD    +   EF+  V     +++C+ V+ G D+++  +V DM AY   +
Sbjct: 68  AGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNALV 127

Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153
            +       VR   ++  +   K   R+ +
Sbjct: 128 HRLFASHANVRNVKSFFSIHRSKFETRIAV 157


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 267,714
Number of extensions: 9533
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 80
Effective length of database: 756,517
Effective search space: 60521360
Effective search space used: 60521360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)