BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0180.p (684 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096120|ref|YP_001101195.1| outer membrane receptor protein... 874 0.0 gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 58 2e-09 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 58 2e-09 >gi|134096120|ref|YP_001101195.1| outer membrane receptor protein [Herminiimonas arsenicoxydans] Length = 668 Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/685 (64%), Positives = 516/685 (75%), Gaps = 18/685 (2%) Query: 1 MALQRQLIASAVLTALAAWSVSAAAQVADTAAAASAVPTTPATQPALQPIVVTATPFASQ 60 M QR L+ASAVL+ALA+ S AQ A + L +VVT+TPF++ Sbjct: 1 MIAQRTLLASAVLSALASLPHSVFAQ---------------AQEQTLSAVVVTSTPFSND 45 Query: 61 EDVQVLTPAKVIAGDELRNKLGNSLGETLNGELGVSASAFGAGASRPIIRGMEGPRVMIL 120 E Q+L PAKV+ GDELR KLGNSLG+TL+ ELGVSASAFGAGASRPIIRG+EGPRV IL Sbjct: 46 EGAQILAPAKVLYGDELREKLGNSLGDTLSQELGVSASAFGAGASRPIIRGLEGPRVKIL 105 Query: 121 QNGMGVADVSTVSNDHAVATEAATARQVEILRGPATLLYGSGAIGGLVNVVNDRIPTELV 180 QNGM V D S++SNDHAV EA+TARQVEILRGPA LLYGSGAIGG+VN++NDRIPT L Sbjct: 106 QNGMSVMDASSLSNDHAVGGEASTARQVEILRGPAALLYGSGAIGGVVNIINDRIPTVLN 165 Query: 181 GKPTGTVEGRYGTVDGEKNGSFSLDTSAGQIGLHLDGNYRDTDNYKIPGNARQADSSSAS 240 +PTG E RYGTVD KN S S+D +AG IGLH+DGN RD D+Y+IPGN +D + S Sbjct: 166 ARPTGETELRYGTVDRTKNMSLSVDGAAGDIGLHIDGNLRDADDYRIPGNVSLSDPALGS 225 Query: 241 GRLPNSFTHETSLGAGISYVSNWGYIGLSAATLDDHYGIPTDEMSFIDLHQSRYDFDTVV 300 GRLPNSF S+G G SY+ +WG+IG S DD YGI T E SFI L Q+R+D + ++ Sbjct: 226 GRLPNSFARANSIGFGASYIQDWGHIGASVGVNDDRYGIATAERSFITLKQTRFDLEGLI 285 Query: 301 NRPFAGIEKLRVRMGYTDYTHIEKQQNGTPNTVFSNRALQTRWELTHALLAGWHGTFGVQ 360 PF IE LR ++G+TDY H E Q+GTP T F N AL++R ELTH LAGW GTFG+Q Sbjct: 286 REPFGNIESLRFKLGHTDYAHTENLQDGTPATNFKNNALESRLELTHKPLAGWRGTFGLQ 345 Query: 361 TEQSNYSALAPDTGAAELTPPTRSNSLAGFLVEERQFGQVLASAGLRAESVSRRPDSGSG 420 TE S +SALA D E P T++NS+AGFLVEER FG ASAG R ESV R PD+ S Sbjct: 346 TENSEFSALAADGSGPETVPITKTNSIAGFLVEERDFGPFRASAGARMESVKRTPDAVSD 405 Query: 421 LPGRDFSLLSWSTGGLWAFQPGYGLGLTYSFAQRAPTVEELYSNGPHESTSTFDIGDQQL 480 L RDF+L S+S GGLW F PGYGLG T S AQRAP +EELYS+GPHEST+TFDIGD L Sbjct: 406 LKQRDFNLGSYSLGGLWTFTPGYGLGATASVAQRAPAIEELYSHGPHESTATFDIGDANL 465 Query: 481 KKETSHNVELSLQKTEGLVRWKGNVFRNKVNNFIYGRTNG-QVDSSGAADPNGEFTQRFW 539 KETS N ELSLQKTEGLVRWK N+F+N+V NFIYGRT+G +VD G A GEFTQRFW Sbjct: 466 TKETSRNFELSLQKTEGLVRWKANIFQNRVKNFIYGRTDGTKVDEDGVA--GGEFTQRFW 523 Query: 540 SQGDATIRGVEAEVTYNWNGEGLSGRVFADTSRGTLENLGNLPLQPATRYGIELGYKTGP 599 +Q ATIRG EAEV+YN GEG S R FADTSRG L L NLPLQPATR+G E+GY+ GP Sbjct: 524 AQNSATIRGAEAEVSYNLRGEGWSLRGFADTSRGKLTGLDNLPLQPATRFGGEVGYRQGP 583 Query: 600 WASGVKLLRAQKQDRLASFETYETPSYTQLDANLSYTQRINGAKLTWFALARNLLNQDIR 659 W SGVK+L AQ+QDRLASFE++ TPSYT++DANLS+TQ I+ +LTWFA+ +NLLN+DIR Sbjct: 584 WRSGVKVLHAQQQDRLASFESFATPSYTRVDANLSFTQNIHSTQLTWFAIVKNLLNEDIR 643 Query: 660 LSTSVLRESVPLGGRNFIVGVRTSF 684 LSTSVLRE PL GRN IVGVRTSF Sbjct: 644 LSTSVLREVAPLPGRNLIVGVRTSF 668 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 113/266 (42%), Gaps = 30/266 (11%) Query: 15 ALAAWSVSAAAQVADTAAAASAVPTTPATQPALQPIVVTATPFASQEDVQVLTPAKVIAG 74 A W ++ A A +A A A P + L+ IVV+A+ F QE VI Sbjct: 30 ARLTWPLAVLAATAGSAHAQDAAP-----EHQLKEIVVSASGF-EQEIKNAPASITVITR 83 Query: 75 DELRNKLGNSLGETLNGELGV--SASAFGAGASRPIIRGMEGPRVMILQNGM-------- 124 +EL++ NS+ E L+ GV ++S G +RG+ +IL +G Sbjct: 84 EELQSNRVNSIAEALSNVEGVDVTSSVGKTGGLSIQMRGLGSAYTLILIDGRRQNPAGNV 143 Query: 125 ---GVADVSTVSNDHAVATEAATARQVEILRGPATLLYGSGAIGGLVNVVNDRIPTELVG 181 G D ++ A E ++E++RGP LYGS AIGG++N++ ++ G Sbjct: 144 VPNGFGDSASTFMPPPSAIE-----RIEVIRGPMATLYGSDAIGGVINIITRKVGKTWGG 198 Query: 182 KPTG-TVEGRYGTVDGEKNGSFSLD--TSAGQIGLHLDGN--YRDTDNYKIPGNARQADS 236 T T + + GS L G +GL + RD + + PG Sbjct: 199 TVTAETTMHEHSEYGDSRAGSLYLSGPLVDGLLGLQVRARKYKRDASDIQWPGKGSGDFP 258 Query: 237 SSASGRLPNSFTHETSLGAGISYVSN 262 + +GR P S T +GA +S+ N Sbjct: 259 TLNTGRDPVSGDVNT-VGARLSFTPN 283 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 117/490 (23%), Positives = 183/490 (37%), Gaps = 102/490 (20%) Query: 11 AVLTALAAWSVSAAAQVADTAAAASAVPTTPATQPALQPIVVTATPFASQEDVQVLTPAK 70 A+++ALA + A AQV T L P+ V+A+ F S E A Sbjct: 17 ALVSALATLTFPAVAQVE--------------TGQQLTPVTVSASRFESAE---APIGAT 59 Query: 71 VIAGDELRNKLGNSLGETLNGELGV--SASAFGAGASRPIIRGM---EGPRVMILQNGMG 125 VI ++R+ S+ E + GV AS G S +RG V I +G+ Sbjct: 60 VITAQQIRDSGAGSINEAIRKIAGVFGRASQSGTSDSSLDLRGFGSSSNQNVAIFVDGIR 119 Query: 126 VADVSTVSNDHAVATEAATA----RQVEILRGPATLLYGSGAIGGLVNVVNDRIPTELVG 181 +++ N+ A +A A ++E++RG +++LYG GA GG + ++ R Sbjct: 120 ISE-----NELQPAVMSAIAIESVERIEVVRGGSSVLYGEGATGGTIQIITKR------- 167 Query: 182 KPTGTVEGRYGTVDGE--KNGSFSLDTS--AGQIGLHLDGNY--RDTDNYKIPGNARQ-- 233 G+ +G +G+V E G + S AG G +D N TDNY+ RQ Sbjct: 168 ---GSTKGTHGSVVAEIGNRGHEEIRASLNAGWDGFSIDANLGALRTDNYRANNELRQEN 224 Query: 234 -----------------ADSSSASGRLPNSFTHETSLGAGISYVSNWGYIGLSAATLDDH 276 DS+ RLP S T Y+ TL Sbjct: 225 FSGGVQWALQNGKVGFRVDSARQDLRLPGSLTLSQ-------------YLQNPRQTLK-- 269 Query: 277 YGIPTDEMSFIDLHQSRYDFDTVVNRPFAGIEKLRVRMGYTDYTHIEKQQNGTPNTVFSN 336 PT+ S L RY F V++ + +E D ++ EK G + SN Sbjct: 270 ---PTENGS---LDSDRYTF--FVDQRYGNLELA------ADLSYREKTSKGDFSGFLSN 315 Query: 337 RALQTRWELTHALLAGWHGT------FGVQTEQSNYSALAPDTGAAELTPPTRSNSLAGF 390 + + A G+ G+ S + GAA T S+A + Sbjct: 316 AESEVKQFSPRAKYVSNFGSTRNELIVGMDFSDSKRFTQSSFNGAANADEHTSQQSMAIY 375 Query: 391 LVEERQFGQVLASAGLRAESVSRRPDSGSGLPGRDFSLLSWSTGGLWAFQPGYGLGLTYS 450 E +FG + +AG R E + +G+ + FSL ++ + P L Sbjct: 376 GRNEIRFGNMRVAAGARHEKFDQDLRAGTSY-NQSFSLNAFDLNASYELTPLVSLFGKAG 434 Query: 451 FAQRAPTVEE 460 + R V+E Sbjct: 435 KSYRVANVDE 444 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.131 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,283,770 Number of extensions: 57004 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 5 Length of query: 684 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 596 Effective length of database: 710,387 Effective search space: 423390652 Effective search space used: 423390652 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)