BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0179.p
         (146 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096119|ref|YP_001101194.1| hypothetical protein HEAR2962 [...    55   1e-09

>gi|134096119|ref|YP_001101194.1| hypothetical protein HEAR2962
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 55.5 bits (132), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 66/148 (44%), Gaps = 31/148 (20%)

Query: 2   NRLRSLRRPAVIVFLAMTLLFAQMLGFVHGIAHAGWVPGTVHSLISEALFDETEDDHAAA 61
           +R  S  R      L + +LFAQ +G  H I HA                D T      +
Sbjct: 35  SRTPSATRLCFAALLVVAVLFAQWMGLRHRIEHA----------------DRTGSQQTIS 78

Query: 62  SVATSAALGSDSGRDADAHDLHDVHAHHPHHSCLDYDAAALSVGVHFDFPPLPLLP---- 117
           + + +++ GS     A+       +A    HSC  +D  AL+       P LP +P    
Sbjct: 79  ATSAASSSGSTLESAAE-------YAGEKLHSCTLFDGMALADSA----PALPFIPLLQT 127

Query: 118 PVRLLALWQAFASWDAPLNCHFFSRAPP 145
            V++LALW A ASWDAP  CHF SRAPP
Sbjct: 128 SVQVLALWAAHASWDAPFLCHFSSRAPP 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 200,172
Number of extensions: 5256
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 72
Effective length of database: 756,517
Effective search space: 54469224
Effective search space used: 54469224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)