BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0178.p
         (161 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096118|ref|YP_001101193.1| DnaK suppressor protein [Hermin...   295   9e-82

>gi|134096118|ref|YP_001101193.1| DnaK suppressor protein
           [Herminiimonas arsenicoxydans]
          Length = 320

 Score =  295 bits (754), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 144/164 (87%), Positives = 151/164 (92%), Gaps = 4/164 (2%)

Query: 2   DIVEKPVVLKVSEVATKTPKTTPAAQ----LLSEEEILKMDEKDYMNEAQLAFFKARLQQ 57
           D +E+PVVLKV EVATK+ KTTP A     LLSEE+ILKM EKDYMN AQLAFFK RLQQ
Sbjct: 157 DNIEQPVVLKVREVATKSSKTTPNAANDGTLLSEEQILKMSEKDYMNPAQLAFFKDRLQQ 216

Query: 58  LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVAID 117
           LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSI +ID
Sbjct: 217 LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIASID 276

Query: 118 NGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161
           +G+YGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 277 SGDYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 320


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 249,281
Number of extensions: 8658
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 86
Effective length of database: 753,222
Effective search space: 64777092
Effective search space used: 64777092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)