BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0176.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096134|ref|YP_001101209.1| thiazole biosynthesis protein [...   381   e-107

>gi|134096134|ref|YP_001101209.1| thiazole biosynthesis protein
           [Herminiimonas arsenicoxydans]
          Length = 263

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/250 (72%), Positives = 208/250 (83%)

Query: 1   MDDQQLLRYSRHILLDDIDIAGQTRLLQSHALIIGAGGLGSPAAMYLASAGVGHITLVDH 60
           M+DQQLLRYSRHILLD+IDI GQ +LL +HALIIGAGGLGSPAA YLASAG+G ITLVD 
Sbjct: 14  MNDQQLLRYSRHILLDEIDIEGQEKLLAAHALIIGAGGLGSPAAFYLASAGIGTITLVDD 73

Query: 61  DTVDLTNLQRQIMHTTARVGEPKVESGRQALQEINPGVQVTTVAERVEGARLQALVTQAD 120
           DTVDLTNLQRQI+HTT RVG+ KV SG++ L EINP +++  + ERV G RL  LV  A 
Sbjct: 74  DTVDLTNLQRQILHTTERVGQAKVVSGQKTLAEINPTIEIIALQERVSGERLDELVRNAS 133

Query: 121 VVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDTRQQSAPCYACLFPPERE 180
           VVLDC DNFATRHA+NRACVA  VPLVSGAAI+FDGQVSVFDTR   APCYACLFP +++
Sbjct: 134 VVLDCCDNFATRHAINRACVANRVPLVSGAAIKFDGQVSVFDTRSDKAPCYACLFPEDQQ 193

Query: 181 FEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLILDAREMEWTAIAIGRD 240
           FEEV C TMGVF+PLVGIIG+ QAAEA+KL+AGIG SL GRLL+LDAR MEW++I I R+
Sbjct: 194 FEEVNCGTMGVFAPLVGIIGSTQAAEALKLVAGIGASLTGRLLLLDARTMEWSSIKIARN 253

Query: 241 RQCPVCAQRH 250
             C VC Q H
Sbjct: 254 ASCSVCGQAH 263


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 473,771
Number of extensions: 19126
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)