BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0174.p (473 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096132|ref|YP_001101207.1| protease [Herminiimonas arsenic... 515 e-147 gi|134094483|ref|YP_001099558.1| lipoprotein precursor [Herminii... 74 2e-14 gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [... 72 8e-14 >gi|134096132|ref|YP_001101207.1| protease [Herminiimonas arsenicoxydans] Length = 452 Score = 515 bits (1326), Expect = e-147, Method: Compositional matrix adjust. Identities = 297/464 (64%), Positives = 371/464 (79%), Gaps = 15/464 (3%) Query: 13 LAAIGVGCLLCAA---VQAQPITERTKQKQAAEKEQADLQQRLANLKRDIDKTETAKDNA 69 +++I V LL QAQ +T+R+KQK+ AE E+ADL+Q+L LKR IDKTETAK +A Sbjct: 1 MSSIIVLALLTGVPLQAQAQKVTDRSKQKKIAESERADLRQKLTTLKRSIDKTETAKSSA 60 Query: 70 ADALSASEQAISKANRSLRDLAQEQQATEARLAQLVKQLNELTALVNAQQAQLSKLLREQ 129 A AL+ SE+AIS A R+LRDLA+EQQ T+ARL +L +Q L +V AQQ+QL++LLREQ Sbjct: 61 ASALAKSEEAISDAQRNLRDLAEEQQQTQARLNELSQQQAALQKIVEAQQSQLARLLREQ 120 Query: 130 YVAGNEDRIKLLLSGDNPNRINRELQYMGYVSQAQAKLIETLRANQQAIRANKADTQNAK 189 YVAGNEDRIKLLLSGDNPNRINRELQYMGY+S+AQA LIE LR N I N+A QN K Sbjct: 121 YVAGNEDRIKLLLSGDNPNRINRELQYMGYISRAQAALIEALRTNLAKIEDNQAAVQNTK 180 Query: 190 FELEEIAQEELEQKKVLEREKGRRQTLLSQLSTKLNAQRQEAGRLEQDQQRLSSLVDKLA 249 EL+EIA E +Q +L++EK +R TLL+QLS KL AQR+EAG +E+D+QRL+SLVDKLA Sbjct: 181 EELDEIAAEARDQHAILQKEKAQRATLLAQLSNKLVAQRKEAGNIERDEQRLASLVDKLA 240 Query: 250 QIIEQQKKAEAEAREKRRQEQLAKAKAEREKRLAEQRARAEKRAAEAAKAAKEGKPAPKT 309 +I++Q+KAEA A EKRRQE+ A+A+ EREKRLA+ A+KR A +A+ + K Sbjct: 241 VLIQEQRKAEAAAAEKRRQERAARAREEREKRLAQ----AKKRGAPDEQAS-----SGKI 291 Query: 310 PDPADAIDDDEPPQSASLGRNDTLPEPSDNFGKPFASLRGQLHLPVKGELVSKFGSRRGD 369 +P +AI+DDEPP S +L RN+ P+ S G FA+LRG+L LP++G+L++KFGS+RGD Sbjct: 292 SNP-NAIEDDEPP-SKTLARNELTPDASVQDG-AFAALRGRLRLPIRGDLIAKFGSKRGD 348 Query: 370 GPTSRGLFIRAQEGSEVRAVAAGRVVFADWLRGFGNLIIVDHGNQYMTIYGNNQSVLKRA 429 GP+ +GLFIRA EG+EV+A+AAGRV+FA+WLRGFGNLIIVDHG+QYMTIYGNNQSVLK A Sbjct: 349 GPSWKGLFIRANEGTEVKAIAAGRVIFAEWLRGFGNLIIVDHGSQYMTIYGNNQSVLKHA 408 Query: 430 GDLVKAGETIATAGNSGGNEQSGLYFEMRYQGRAFDPLGWVTSR 473 GD VKAG+ IA+ GNSGGNEQSGLYFEMR+QGRAFDPLGWVT R Sbjct: 409 GDAVKAGDVIASTGNSGGNEQSGLYFEMRHQGRAFDPLGWVTIR 452 >gi|134094483|ref|YP_001099558.1| lipoprotein precursor [Herminiimonas arsenicoxydans] Length = 304 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 8/122 (6%) Query: 353 LPVKGELVSKFGSRRGDGPTSRGLFIRAQEGSEVRAVAAGRVVFA-DWLRGFGNLIIVDH 411 P +G+LV+ F + +G+ I + G +V A AG+V++A +RG+GNL+IV H Sbjct: 190 WPAEGKLVATFDDNK------KGIDIAGKSGQQVLAAGAGKVMYAGSGIRGYGNLVIVKH 243 Query: 412 GNQYMTIYGNNQSVLKRAGDLVKAGETIATAGNSGGNEQSGLYFEMRYQGRAFDPLGWVT 471 + ++ Y +N+ + + G V G+ IA G+S + L+FE+R QG+ DP ++ Sbjct: 244 TSTLLSAYAHNKIIHVKEGQSVSKGQKIADMGDSDADSVK-LHFEIRQQGKPVDPSKFLP 302 Query: 472 SR 473 SR Sbjct: 303 SR 304 >gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [Herminiimonas arsenicoxydans] Length = 233 Score = 71.6 bits (174), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 4/110 (3%) Query: 361 SKFGSR----RGDGPTSRGLFIRAQEGSEVRAVAAGRVVFADWLRGFGNLIIVDHGNQYM 416 S FG R G G+ A G+ +RA A G V A++ +GN++ +DHGN + Sbjct: 108 STFGRRLDPFSGRSAMHEGIDFAAPIGTPIRAAAGGVVTVAEFHPQYGNMMEIDHGNDMI 167 Query: 417 TIYGNNQSVLKRAGDLVKAGETIATAGNSGGNEQSGLYFEMRYQGRAFDP 466 T Y + +L + GD+V+ G+ IA G +G + L+FE+R +G A DP Sbjct: 168 TRYAHTSRLLMQVGDIVRRGQHIADIGTTGRSTGPHLHFEVRIKGVAQDP 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 614,527 Number of extensions: 20635 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 4 Length of query: 473 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 388 Effective length of database: 720,272 Effective search space: 279465536 Effective search space used: 279465536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)