BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0173.p
         (248 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096131|ref|YP_001101206.1| phosphoglyceromutase 1 [Hermini...   366   e-103
gi|134096414|ref|YP_001101489.1| putative phosphoglyceromutase 1...   255   1e-69
gi|134093534|ref|YP_001098609.1| putative phosphoglycerate/bisph...    62   3e-11

>gi|134096131|ref|YP_001101206.1| phosphoglyceromutase 1
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  366 bits (939), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/245 (71%), Positives = 205/245 (83%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           MYKIV MRHGESTWNL NRFTGW DVDLTEKG AEA+ AGKLL++AGF+FDLAY+SVLKR
Sbjct: 1   MYKIVLMRHGESTWNLDNRFTGWADVDLTEKGCAEAKHAGKLLRDAGFTFDLAYSSVLKR 60

Query: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120
           AIRT+W TLDEMD M+IP+  DW LNERHYGALQG+NKAETA++YG +QVL WRRSYDTP
Sbjct: 61  AIRTMWITLDEMDLMWIPVVCDWHLNERHYGALQGMNKAETASKYGADQVLQWRRSYDTP 120

Query: 121 PNPLTPGEERDSFGDARYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIVS 180
           P  L   + R  + D RYA L RE++PL ECLKDT+ RV P WND I P+IRAG+QII+S
Sbjct: 121 PKLLAEDDPRTMYKDPRYATLKREEIPLGECLKDTLLRVEPYWNDTIVPSIRAGRQIIIS 180

Query: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSYYLGDQSAIEAALKA 240
           AHGNSLRALIK LD ISD DIV L+IPNG+P+VYELD +LKPI+ YYLGDQ ++ AA++A
Sbjct: 181 AHGNSLRALIKILDDISDQDIVSLSIPNGRPIVYELDDNLKPIRHYYLGDQESLAAAVQA 240

Query: 241 VANQG 245
            A+ G
Sbjct: 241 AASHG 245


>gi|134096414|ref|YP_001101489.1| putative phosphoglyceromutase 1,
           gpmA-like [Herminiimonas arsenicoxydans]
          Length = 239

 Score =  255 bits (652), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 117/221 (52%), Positives = 157/221 (71%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           M  +V +RHGES WN  NRFTGW D+DLT  G+ +AR AG+ L EAGF FDLA TS+LKR
Sbjct: 1   MGNLVIVRHGESQWNRENRFTGWTDIDLTANGIQQARNAGRALAEAGFRFDLALTSMLKR 60

Query: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120
            IR+ W  LDEMD MYIPI + WRLNERHYGAL G N+AET A++G+EQV  WRR +D+ 
Sbjct: 61  TIRSQWLMLDEMDAMYIPIISHWRLNERHYGALTGQNRAETIARFGEEQVWKWRRGFDSQ 120

Query: 121 PNPLTPGEERDSFGDARYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIVS 180
           P  +   + R  + + RY G+ R+ +PL E LK+TV RV   W++ I PA++  K +I+S
Sbjct: 121 PPLMDADDPRAPWREPRYQGIPRDSLPLGESLKETVERVRVFWDEVIVPALKQDKNVIIS 180

Query: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLK 221
           +HGNS RAL+K L+ +S+ ++   ++PN  PLVY+LD  L+
Sbjct: 181 SHGNSQRALVKLLEDMSEEEVARFDVPNSVPLVYKLDTGLR 221


>gi|134093534|ref|YP_001098609.1| putative
           phosphoglycerate/bisphosphoglycerate mutase
           [Herminiimonas arsenicoxydans]
          Length = 216

 Score = 62.0 bits (149), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           M +I+ +RHGE+ WN+  R  G  D+DL  +GV +    G+ L +     D  ++S LKR
Sbjct: 1   MTEILLIRHGETDWNVEKRLQGHHDIDLNREGVRQVAALGRALLDE--PLDAIFSSDLKR 58

Query: 61  AIRTLWTTLDEMDQMYIP----IKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRS 116
           A+ T          + IP    ++    L ER +GAL+GL   E  A+Y DE     RR 
Sbjct: 59  ALGT-------AQGIAIPRGMSVQLHKGLRERCFGALEGLLHPEIHARYPDEYAAWKRRD 111

Query: 117 YDT--PP 121
            D   PP
Sbjct: 112 IDANYPP 118


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 504,063
Number of extensions: 21099
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 169
Effective length of database: 740,042
Effective search space: 125067098
Effective search space used: 125067098
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)