BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0170.p
         (164 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096128|ref|YP_001101203.1| preprotein translocase subunit ...   260   2e-71

>gi|134096128|ref|YP_001101203.1| preprotein translocase subunit
           SecB [Herminiimonas arsenicoxydans]
          Length = 164

 Score =  260 bits (665), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/153 (83%), Positives = 139/153 (90%), Gaps = 4/153 (2%)

Query: 11  QPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFESTVTITVTAK 70
           QPVFQIQRVYLKDLSLEQPNSPAIFLEQ+AP IEV+VDVGAE LAEG+FESTVTITVTAK
Sbjct: 7   QPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPVIEVAVDVGAEQLAEGLFESTVTITVTAK 66

Query: 71  VNDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADAITRAGFPPVH 130
           +NDKVAFLVE KQAGIFE RN+P EQLDPL+GIGCP+ IYPYLRANIADAITRAGFPPVH
Sbjct: 67  INDKVAFLVEAKQAGIFEARNIPDEQLDPLIGIGCPSTIYPYLRANIADAITRAGFPPVH 126

Query: 131 LAEINFEVFYQQRLQALAEQQGATLVNNGSTAV 163
           L+EINFEVFYQQRL+ALA+Q  +    NGS  V
Sbjct: 127 LSEINFEVFYQQRLEALAQQHAS----NGSGIV 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 279,117
Number of extensions: 10666
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 89
Effective length of database: 753,222
Effective search space: 67036758
Effective search space used: 67036758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)