BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0169.p
         (149 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096127|ref|YP_001101202.1| hypothetical protein HEAR2971 [...   167   2e-43

>gi|134096127|ref|YP_001101202.1| hypothetical protein HEAR2971
           [Herminiimonas arsenicoxydans]
          Length = 132

 Score =  167 bits (424), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 101/129 (78%)

Query: 21  ALALDFKSVGAAPAIMYDAPSEKGRRVYVAPRGMPVEVVLTYGEWSKVRDAAGTLSWISS 80
           A A +FKSVGA PA++Y+APS++GR+++VAPRGMPVE+VLT   WSKVRDAAG LSW+ +
Sbjct: 4   AHAAEFKSVGAHPAVLYNAPSDRGRKIFVAPRGMPVEIVLTQNGWSKVRDAAGDLSWVET 63

Query: 81  KALTPKRMLMVSVANARIFSAADEGSPVVFTADKSVLLEMLESPNNGWVKVRHRDGQSGF 140
            ALT KR +M + AN ++ +AA+E S VV T DK VLLE++  P +GWVK++HRDG  GF
Sbjct: 64  SALTSKRNVMATTANLKLHAAAEETSAVVATVDKGVLLELVAPPASGWVKLKHRDGPIGF 123

Query: 141 VKAGEVWGD 149
            K  EVWG+
Sbjct: 124 AKTAEVWGE 132


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 289,989
Number of extensions: 10458
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 75
Effective length of database: 756,517
Effective search space: 56738775
Effective search space used: 56738775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)