BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0164.p
         (384 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096287|ref|YP_001101362.1| putative transmembrane cytochro...   617   e-178

>gi|134096287|ref|YP_001101362.1| putative transmembrane cytochrome
           C-type biogenesis transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 383

 Score =  617 bits (1591), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 305/384 (79%), Positives = 350/384 (91%), Gaps = 1/384 (0%)

Query: 1   MELTQANQAYAEEQGFFRRLSIVDWIYAVLLVAGSLYAFGRFGSYMDYYEKAVLLLAAPT 60
           M+L Q  Q Y +  GFF+RLS++DW+Y + L+A SL+A  RFG +MD YE+A+L+LAAPT
Sbjct: 1   MDLVQ-EQMYTQPPGFFKRLSMIDWLYGLALLAASLFALNRFGHHMDVYEEAILVLAAPT 59

Query: 61  FAWLGWHWKPVRLLMVVIAVLSLGAIAMYGGALELADKKFFLKYMLSSQSAILWMSALFC 120
           FAWLGW+WK VR L+ V+AVL+L A++MYGGAL + ++KFFLKY+LSSQSAILWMS LF 
Sbjct: 60  FAWLGWYWKSVRWLIAVLAVLALSAVSMYGGALAMGEQKFFLKYLLSSQSAILWMSMLFL 119

Query: 121 LSTLFYWGGLATKAGTGNAIGSRLCWAAVVLGFTGLMVRWYESYLIGPDVGHIPISNLYE 180
           LSTLFYWGGL T++ TG +IGS+LCWAAV++GFTG++VRWYESYLIG DVGHIP+SNLYE
Sbjct: 120 LSTLFYWGGLITRSTTGGSIGSKLCWAAVIMGFTGMLVRWYESYLIGADVGHIPVSNLYE 179

Query: 181 VFILFCLITALFYLYYEQRYATRQLGAFVLTVITAAVGFLMWYTVSRDAAEIQPLVPALQ 240
           VFILFC+ITALFYLYYEQ YATRQLG FVL VI+AAVGFL+WYTV+R+AA+IQPLVPALQ
Sbjct: 180 VFILFCMITALFYLYYEQIYATRQLGPFVLLVISAAVGFLLWYTVTRNAADIQPLVPALQ 239

Query: 241 SWWMKIHVPANFIGYGTFALASMVAVAYLLRERGILADRLPTLEVLDDVMYKAIAVGFAF 300
           SWWMKIHVPANFIGYGTF+LA+MVAVAYLL+  GIL DRLP LEVLDDVMYKAIAVGFAF
Sbjct: 240 SWWMKIHVPANFIGYGTFSLAAMVAVAYLLKSHGILGDRLPALEVLDDVMYKAIAVGFAF 299

Query: 301 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRTAAWWALVG 360
           FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYA+WLHMRLMKGLRG+ AAWWA++G
Sbjct: 300 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYASWLHMRLMKGLRGKVAAWWAVIG 359

Query: 361 LLVTTFAFLGVNMFLSGLHSYGEL 384
           LLVTTFAFLGVNMFLSGLHSYGEL
Sbjct: 360 LLVTTFAFLGVNMFLSGLHSYGEL 383


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.140    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 749,927
Number of extensions: 31344
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 301
Effective length of database: 726,862
Effective search space: 218785462
Effective search space used: 218785462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)