BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0163.p
         (717 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096288|ref|YP_001101363.1| putative cytochrome C-type biog...   989   0.0  

>gi|134096288|ref|YP_001101363.1| putative cytochrome C-type
           biogenesis transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 707

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/708 (66%), Positives = 575/708 (81%), Gaps = 12/708 (1%)

Query: 3   TGSSTQGIQIRTRQRWLSEAVELVSSMRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQF 62
           T +ST G +++T +RWL++ VEL+SSMRFAISLLTLI+IAS+IGTV+KQNEPM NYVNQF
Sbjct: 5   TETSTGGWELKTSRRWLADTVELLSSMRFAISLLTLISIASIIGTVLKQNEPMTNYVNQF 64

Query: 63  GPFWFEIFGKVGLYAVYSAWWFLLIMGFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSL 122
           GPFWFE+F K  LYA+YS WWFLLIM FLV+STSLC+ RN PKML+D++SWR+NVREQSL
Sbjct: 65  GPFWFEVFAKFNLYALYSTWWFLLIMAFLVVSTSLCLIRNTPKMLKDMRSWRENVREQSL 124

Query: 123 RNFHHKHEWTTAEAPAEAAARLARQVAARGYQTKLADKDGGTLLAAKQGAANKWGYIFAH 182
           RNFHHK EW    + A   A+   +VAA GY+TK+ +K+G TL+A +QGAANKWGYIFAH
Sbjct: 125 RNFHHKVEWRVPFSRAALTAQSLARVAANGYKTKVVEKEGATLIAGRQGAANKWGYIFAH 184

Query: 183 AAIVIICLGGLLDSDLPIRFQQWFYGKSAFAGNGIISEIPERYRLGLNNPTFRGNTLIPE 242
           ++IVIIC+GGLLDS+LPIR Q+  + K+ F+G+G+I++IPE++RLGL NPTFRGN LIPE
Sbjct: 185 SSIVIICIGGLLDSELPIRIQKVIFDKTPFSGSGVIAQIPEQHRLGLGNPTFRGNMLIPE 244

Query: 243 GASSSTAIIPQKDGVMIQDLPFTIQLKRFIIDFYSTGMPKLFASEVVVRDHETGKETAAT 302
           G+SSSTAIIPQ+DGV+IQDLPFT++L +FIID+YSTGMPKLFASEVVV DHE GK   AT
Sbjct: 245 GSSSSTAIIPQQDGVLIQDLPFTVKLTKFIIDYYSTGMPKLFASEVVVTDHENGKVFPAT 304

Query: 303 IKVNEPLIYKGVAIYQSSFEDGGSKLKLVGYPMRGGTNSHFDLAGEVNGSTPLPAGM-GD 361
           IKVNEPLIY+GVA+YQSSFEDGGS+L L  YPMRG  +    + GEV  ++ L  G  GD
Sbjct: 305 IKVNEPLIYRGVAVYQSSFEDGGSRLTLAAYPMRGTEHVALPMQGEVGNTSALGTGKGGD 364

Query: 362 YTIEWSGFRPFNVENMQAQGAGSTSGDARAVNVGKSVNRGFI-ADLDKHLGSSAKNANSK 420
           YT+EWSGFR FNVENM   G      D RAVN  K    GF+ + LDKHLGS+AKNANSK
Sbjct: 365 YTVEWSGFRAFNVENMAQNGQ-----DLRAVNPAK----GFMSSSLDKHLGSAAKNANSK 415

Query: 421 DFKNVGPSVQYKLRDKTGQAREYFNYMQSLPIDGADVFLAGVREQPDQPFRYLRIPADDK 480
           D KNVGPSVQYKLRDK GQAREY NYMQ + IDGA VFLAG+RE P +PFR+LRIPADD 
Sbjct: 416 DLKNVGPSVQYKLRDKNGQAREYNNYMQPMLIDGAYVFLAGMRESPAEPFRFLRIPADDN 475

Query: 481 DSVAEWMRLRAALANPALREEAAHRYAQQAISGGREASPVLREQLQQSALRGLTIFAGDG 540
           D+V EWMRLRAA+ NP LR  AA RYA++A+   R  + VLR QLQ S+L+GLTIF GD 
Sbjct: 476 DTVDEWMRLRAAILNPELRLLAAQRYAKRALPATRTDAAVLRAQLQASSLKGLTIFGGDE 535

Query: 541 KVSGYIAVTRFLEQLPAAEQEKAADIFMKILNGSMWELWQAARAQDGLAPVASDEKHGRF 600
             +GY+AV+RFLE++   +QE+AA+IFMKILNGS+W+LWQ AR +DGL  V  DEKHGRF
Sbjct: 536 DEAGYVAVSRFLEKVAPQDQEQAAEIFMKILNGSLWDLWQVAREKDGLKAVEPDEKHGRF 595

Query: 601 LQLAINALADAAFYPAPVFLQLSGFQEIKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLY 660
           LQLA NA +DA FY +PV+LQL GF E+KASVLQ+TRSPGK +VY GCL LV+GVF+M Y
Sbjct: 596 LQLAANAFSDAFFYGSPVYLQLQGFDEVKASVLQITRSPGKNIVYFGCLLLVIGVFSMFY 655

Query: 661 IRERRLWIWIKPAADGQGSQALLAMSTQRRTLDFDQEFEQMKARLTGA 708
           IRERRLWIWIK   DG  ++AL+A+S+QR+TLDF++E E++K +L  A
Sbjct: 656 IRERRLWIWIKSEDDG-SARALMAVSSQRKTLDFEKEVEKLKQQLQQA 702


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,348,645
Number of extensions: 56524
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 629
Effective length of database: 710,387
Effective search space: 446833423
Effective search space used: 446833423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)