BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0162.p (220 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096289|ref|YP_001101364.1| cytochrome c4 [Herminiimonas ar... 303 6e-84 gi|134095985|ref|YP_001101060.1| cytochrome C bihemic c4 family ... 99 2e-22 gi|134094040|ref|YP_001099115.1| putative cytochrome c [Herminii... 55 3e-09 gi|134094041|ref|YP_001099116.1| putative cytochrome c [Herminii... 54 6e-09 >gi|134096289|ref|YP_001101364.1| cytochrome c4 [Herminiimonas arsenicoxydans] Length = 221 Score = 303 bits (775), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 141/222 (63%), Positives = 179/222 (80%), Gaps = 3/222 (1%) Query: 1 MNRAFSPLLYTVLAAVLAVSSAAHAADDKKA--PFKADPAKGEALYTNGDSARNIVACVS 58 MNR P++ ++ A L ++S AHA+++KKA KADPAKGEALY GD++RN++AC++ Sbjct: 1 MNRVCLPIVKSLFVAFLTLASIAHASEEKKAVKAVKADPAKGEALYNTGDASRNVIACIA 60 Query: 59 CHGAAGNSTITQNPKLSGQHEAYIAKQLLNFRTPERNNPVMTPMAKALSEEDIHNLAAYL 118 CHGAAGNS+I +NPKLSGQH AYI KQLL+F++ RNN +M P+AK ++EEDI NL AY+ Sbjct: 61 CHGAAGNSSIAENPKLSGQHGAYIHKQLLDFKSGARNNAIMGPIAKGMTEEDIRNLIAYM 120 Query: 119 SAQEPKPGAAKNKETIELGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDY 178 +P PGAA+NK+T+ELGKHI+R GIA K+VPACA CHS NGAG+PAQ+PRLAGQHQ Y Sbjct: 121 DKSKPTPGAARNKDTVELGKHIFRGGIAEKSVPACAACHSANGAGLPAQFPRLAGQHQTY 180 Query: 179 TVAQLTNFRGGARTNSVQMTAIAERLSDKEIKAVADYIAGLK 220 T AQL FR GAR N QM+ I +R+SD+EIKAVADY+AGLK Sbjct: 181 TEAQLIAFRTGAREND-QMSKIVKRMSDEEIKAVADYVAGLK 221 >gi|134095985|ref|YP_001101060.1| cytochrome C bihemic c4 family protein [Herminiimonas arsenicoxydans] Length = 238 Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 9/179 (5%) Query: 50 ARNIVACVSCHGAAGNS-TITQNPKLSGQHEAYIAKQLLNFRTPERNNPVMTPMAKALSE 108 A+ + ACV CHG G + + P+++G+ Y+ QL+NFR +R PVMT M + +S+ Sbjct: 37 AQRVAACVVCHGKEGRAGSDGYYPRIAGKPAGYLYNQLINFRDGKRTYPVMTAMLENMSD 96 Query: 109 EDIHNLAAYLSAQ-----EPKPGAAKNKETIELGKHIWRAGIAAKNVPACAGCHSPNGAG 163 + +A Y S Q EP+P N +E G+ + G AK +PAC CHS G Sbjct: 97 AYLREIAQYFSDQHPPYPEPQP-TQSNPAELERGRVLVHDGDKAKGIPACVACHSAKMTG 155 Query: 164 IPAQYPRLAGQHQDYTVAQLTNFRGGARTNSVQ--MTAIAERLSDKEIKAVADYIAGLK 220 P L G +DY + Q+ ++ G R + M I +++S +I AV +++G + Sbjct: 156 TAPAIPGLVGLPRDYLLGQIGAWKIGTRHAAAPDCMAEIVKKMSATDISAVTAWLSGQR 214 >gi|134094040|ref|YP_001099115.1| putative cytochrome c [Herminiimonas arsenicoxydans] Length = 123 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%) Query: 49 SARNIVACVSCHGAAGNST----ITQNPKLSGQHEAYIAKQLLNFRTPERNNPVMTPMAK 104 +A + C+ CH G + Q P + GQ E YI L ++ ERN+P M +A Sbjct: 46 AANKVSMCIGCHAIPGYKATFPEVYQVPMIGGQSEKYIISALHAYKKGERNHPSMHGIAA 105 Query: 105 ALSEEDIHNLAAYLSAQE 122 ++S++DI ++AAY S Q+ Sbjct: 106 SMSDQDIADVAAYYSQQK 123 >gi|134094041|ref|YP_001099116.1| putative cytochrome c [Herminiimonas arsenicoxydans] Length = 117 Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 56 CVSCHGAAGNSTITQN-PKLSGQHEAYIAKQLLNFR-----TPERNNPVMTPMAKALSEE 109 C SCHGA + I PKL+GQH+ Y+ ++ ++ + R+N +M P++K LS + Sbjct: 38 CASCHGADFQTPIDPGYPKLAGQHKDYLKHAMVAYKRGNQVSNGRSNAIMGPLSKQLSGQ 97 Query: 110 DIHNLAAYL 118 DI N+A YL Sbjct: 98 DIENIATYL 106 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 370,413 Number of extensions: 13986 Number of successful extensions: 59 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 4 Length of query: 220 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 142 Effective length of database: 743,337 Effective search space: 105553854 Effective search space used: 105553854 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)