BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0161.p
         (236 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096290|ref|YP_001101365.1| ribosome biogenesis GTP-binding...   408   e-115

>gi|134096290|ref|YP_001101365.1| ribosome biogenesis GTP-binding
           protein YsxC [Herminiimonas arsenicoxydans]
          Length = 239

 Score =  408 bits (1049), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/231 (81%), Positives = 209/231 (90%)

Query: 1   MSQLWQARFYTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60
           MS LWQARF+TTVNHLRDLP T VPEIAFAGRSNAGKS+AIN+L NQK+L FASKTPGRT
Sbjct: 1   MSLLWQARFFTTVNHLRDLPNTQVPEIAFAGRSNAGKSTAINILSNQKKLCFASKTPGRT 60

Query: 61  QHINYFSLGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120
           QHINYFS+GGAHVGQHR DE + +EIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYV++R
Sbjct: 61  QHINYFSIGGAHVGQHRKDETKVEEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVQRR 120

Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTFL 180
           EQLAALV+IVDSRRPFTDLDIQM+EWFAPTGKPIHCIL+K+DKLNRNESTNALR A T L
Sbjct: 121 EQLAALVLIVDSRRPFTDLDIQMLEWFAPTGKPIHCILTKSDKLNRNESTNALRTANTLL 180

Query: 181 QSYVDADGQPFPFTAQLFSALKRIGLEEANDKILELAGLTGDAEDQTTAAT 231
            SYVD  GQPFPFTAQLFSALKR G++EANDKILEL GL  +  +++ + T
Sbjct: 181 ASYVDEYGQPFPFTAQLFSALKRTGIDEANDKILELLGLNDEVSEESDSKT 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 432,604
Number of extensions: 16899
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 157
Effective length of database: 740,042
Effective search space: 116186594
Effective search space used: 116186594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)