BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0160.p
         (339 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096291|ref|YP_001101366.1| delta-aminolevulinic acid dehyd...   566   e-163

>gi|134096291|ref|YP_001101366.1| delta-aminolevulinic acid
           dehydratase [Herminiimonas arsenicoxydans]
          Length = 337

 Score =  566 bits (1460), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/337 (79%), Positives = 301/337 (89%)

Query: 3   LTDFSSNAGYPALRMRRMRRDAFSRALMAENVITSADLIYPVFVQEGQNLRTPVASLPGV 62
           ++ F SNA +PA+RMRRMR+DAFSRA+M ENV+T ADLIYPVFV EG+N    ++S+PGV
Sbjct: 1   MSKFLSNAQFPAVRMRRMRKDAFSRAMMRENVLTPADLIYPVFVTEGKNQSEKISSMPGV 60

Query: 63  ERLSLDTLLPVAEQCVKLGVPVLALFPVIDPALKTPDGIEATNPDGLVPRVVRALKDRFP 122
           ERLS+D LL VAE+CV L +PVLALFPVI+ +LKTPDGIEA NPDGLVPR VR LK  FP
Sbjct: 61  ERLSVDLLLSVAEECVSLHIPVLALFPVINASLKTPDGIEACNPDGLVPRAVRELKKHFP 120

Query: 123 ELGVLCDVALDPYTSHGQDGVLDDTGYILNDETLTLLVKQAQTQADAGVDVVAPSDMMDG 182
           ELG+L D+ALDPYTSHGQDGVLD  GY+LNDET ++L KQA T A+AGVD+VAPSDMMDG
Sbjct: 121 ELGILTDIALDPYTSHGQDGVLDANGYVLNDETCSILTKQALTHAEAGVDIVAPSDMMDG 180

Query: 183 RIAAIRDMLEANGHIYTRIMAYSAKYASAFYGPFRDAVGSAANLGKGSKSTYQMDPANSD 242
           RI AIR+ LEA+ HIYTRIMAYSAKYASAFYGPFRDAVGS+A LGK +K+TYQMDPANSD
Sbjct: 181 RIGAIRNALEAHHHIYTRIMAYSAKYASAFYGPFRDAVGSSATLGKSNKATYQMDPANSD 240

Query: 243 EALREVALDLQEGADMVMVKPGMPYLDIVRRVKDEFRVPTFAYQVSGEYAMIKAAAQNGW 302
           EALREVALDL EGADMVMVKPGMPYLDIVRRVKDEF+VPTFAYQVSGEYAMIKAAAQ GW
Sbjct: 241 EALREVALDLAEGADMVMVKPGMPYLDIVRRVKDEFKVPTFAYQVSGEYAMIKAAAQQGW 300

Query: 303 LDHDKTMMESMMAFKRAGADGVLTYFALDIARKLKQG 339
           LDHDKTMME+M+AFKRAGADGVLTYFA DIAR+LK G
Sbjct: 301 LDHDKTMMEAMIAFKRAGADGVLTYFARDIARRLKLG 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 647,730
Number of extensions: 27694
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 257
Effective length of database: 730,157
Effective search space: 187650349
Effective search space used: 187650349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)