BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0156.p
         (529 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog...    69   5e-13
gi|134095327|ref|YP_001100402.1| multifunctional: transcriptiona...    61   1e-10

>gi|134095838|ref|YP_001100913.1| succinate-semialdehyde
           dehydrogenase I, NADP-dependent [Herminiimonas
           arsenicoxydans]
          Length = 492

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 148/392 (37%), Gaps = 56/392 (14%)

Query: 44  HEVAAAVDAAEKAYPLYRAIAAEQRALFLEAIADEIDALGDDFLAAVSRETALPATPRLA 103
            E   A+ AA+ A+P + A   ++RA+ +    D I A  DD    ++ E   P      
Sbjct: 54  EETETAIRAAQSAFPAWAAKTGKERAIIMRQWFDLIIANVDDLAILMTAEQGKPLIES-R 112

Query: 104 GERARTSGQMRLFAKVVRR--GDFYGARIDT--ALPQRQPLPRPDIRQYKIGVGPVAVFG 159
           GE    +  +  F++  +R  GD   +  +    L  +QP            +G  A   
Sbjct: 113 GEVIYGASFIEWFSEEAKRVSGDVMASTWNDKRTLTIKQP------------IGICAAIT 160

Query: 160 ASNFPLAFSVAGGDTAAALAAGCPVVFKAHSGHLVTSELVANAIERAVKKTGMPAGTFNM 219
             NFP+A        A A+AAGC +V K        + L A AI     + G+PAG  N+
Sbjct: 161 PWNFPIAMITR--KVAPAVAAGCTIVIKPAE----QTPLSALAIAELAHRAGLPAGVINV 214

Query: 220 IYGDR-----VGAQLVKSAGIQAVGFTGSLRGGRALCDMAAARPQPIPVFAEMSSINPII 274
           I  D      VG  L  S  ++ V FTGS   GR L +  A   + I +  E+    P I
Sbjct: 215 ITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAPTVKKIAL--ELGGHAPFI 272

Query: 275 LMSEALKVRGDAIAKDLAGSVTVGVGQLCTSPGLLLGVRSPELTAFIEKLSAAFGGSNPA 334
           +  +A     DA       S     GQ C        V       F++KL+A        
Sbjct: 273 VFDDA---DLDAAVTGALQSKYRNAGQTCVCTNRFY-VHESIYDVFVQKLAAGAARIKVG 328

Query: 335 TMLNSGGL--------------THYNGGVAR-LTQLPGVKVIATGGTSYTQAVPHLFKAD 379
                G L               H +  V +  + + G K  A GG  Y   V      D
Sbjct: 329 NGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVMTGGKKHALGGHFYEPTVLSNITDD 388

Query: 380 AALLFSKEAPLEEEVFGPSTVIVELESREQLL 411
            ++       + EE FGP   IV+ ++ ++ +
Sbjct: 389 MSI-------MHEETFGPVAAIVKFKTEDEAI 413


>gi|134095327|ref|YP_001100402.1| multifunctional: transcriptional
           repressor of proline utilization; proline dehydrogenase;
           pyrroline-5-carboxylate dehydrogenase [Herminiimonas
           arsenicoxydans]
          Length = 1224

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 115/273 (42%), Gaps = 43/273 (15%)

Query: 43  EHEVAAAVDAAEKAYPLYRAIAAEQRALFLEAIADEIDALGDDFLAAVSRETALPATPRL 102
           E  +A A+  AEK    ++  A  +RA  L   A+       +F+A   RE A    P  
Sbjct: 604 ERALALAIAGAEK----WQKTAPSERAGILLNAAELFQQHAPEFIALSVRE-AGKTLPNA 658

Query: 103 AGERARTSGQMRLFAKVVRRGDFYGARIDTALPQRQPLPRPDIRQYKIGVGPVAVFGASN 162
            GE   T   +R          +Y A+I TA             Q +  +G VA     N
Sbjct: 659 IGELRETIDFLR----------YYSAQITTA-------------QMEQALGLVACISPWN 695

Query: 163 FPLAFSVAGGDTAAALAAGCPVVFKAHSGHLVTSELVANAIERAVKKTGMPAGTFNMI-- 220
           FPL  S+  G  +AALAAG  V+ K        + L+A    + + + G+P      +  
Sbjct: 696 FPL--SIFTGQLSAALAAGNAVLAKPAE----QTPLIAFRAVQLMHQAGVPEDVLLFLPG 749

Query: 221 YGDRVGAQLVKSAGIQAVGFTGSLRGG----RALCDMAAARPQPIPVFAEMSSINPIILM 276
            G   GAQLV  A +  V FTGS +      R L   + A  + IP+ AE    N +I+ 
Sbjct: 750 RGQTTGAQLVADARVSGVVFTGSTQVATIIHRTLAQRSMAERRDIPLIAETGGQNAMIVD 809

Query: 277 SEALKVRGDAIAKDLAGSVTVGVGQLCTSPGLL 309
           S AL    + + +D+  S     GQ C++  +L
Sbjct: 810 SSAL---CEQVVRDVIASAFDSAGQRCSALRVL 839


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 986,089
Number of extensions: 41330
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 529
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 443
Effective length of database: 716,977
Effective search space: 317620811
Effective search space used: 317620811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)