BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0155.p
         (379 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093379|ref|YP_001098454.1| putative alcohol dehydrogenase ...   133   2e-32

>gi|134093379|ref|YP_001098454.1| putative alcohol dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 412

 Score =  133 bits (334), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 172/360 (47%), Gaps = 39/360 (10%)

Query: 26  RLGIKKPLLVTDPGI--RNAGLLDKVLGQLKDGAGAVVYDQTPPNPNEGAVRTAVALFRE 83
           RLG +  + +TD     +   + + +      G   +V+D    +P       A AL R 
Sbjct: 31  RLGYRSGVFITDTFFSEKTPWVREYIEAAEALGITTIVFDGGKADPTTTLCDDATALIRA 90

Query: 84  H----GCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANITAKTAPVIAIPT 139
                  D ++A+GGGS+IDLAK + V      P+  F    G L N   K  P+IA+PT
Sbjct: 91  QIGAVQPDHVIALGGGSNIDLAKALCVTIPDGKPVAEFI---GVLPN-APKALPLIALPT 146

Query: 140 TAGTGSEVGRGAILI-LDDGRKVGIISPYLVPRLAICDPELTLGLPPLMTAATGMDAIAH 198
           TAGTGSE   GAILI   +  KV ++   L P +A+ DPE T   PP +TA +G+DA+ H
Sbjct: 147 TAGTGSEATPGAILIDPSNATKVAVMDNVLRPVIALIDPEYTYTCPPRVTADSGVDALTH 206

Query: 199 CLETFMAPAFNPPADGIALD-------GLWRAWAH---------IERATREPGDREARLN 242
            +E+++         G  +D        L   +AH         + R   +  D EAR+ 
Sbjct: 207 AVESYLTLDSAEFDRGGQVDPGYSGRSSLTMMFAHEAIDLCARYLVRTYDDGSDTEARIG 266

Query: 243 MMSASMQGAMAF-QKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAPSMVKD 301
           M  AS   A+++   GL  VH +++++ GI     HG+ NA+ LP ++     A   V+ 
Sbjct: 267 MAYASHYAALSYGGAGLNAVHGIAYAVAGITHET-HGSTNAVMLPYVL----DAMRSVRH 321

Query: 302 NKMARMAHAMGLSSG------AEIGPAIREMSRRLGLPAGLRELGVSESLFPQIIKGALA 355
           +++ ++A   G+  G       E+   IRE+   LG+P  L   G++    P ++  ALA
Sbjct: 322 DELLKVARLFGIKDGDEARAVKELPVVIRELIGHLGIPTTLATFGIAREQLPGMVADALA 381


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 772,306
Number of extensions: 34892
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 296
Effective length of database: 726,862
Effective search space: 215151152
Effective search space used: 215151152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)