BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0154.p (314 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 82 4e-17 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 73 2e-14 gi|134093718|ref|YP_001098793.1| LysR family transcriptional reg... 63 1e-11 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 60 1e-10 gi|134096588|ref|YP_001101663.1| putative transcriptional regula... 59 3e-10 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 3/195 (1%) Query: 14 RLHLRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATE 73 R L L L + + GS+ AE+ L+ AS ++ +E LG L R RG+EAT Sbjct: 2 RFDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATP 61 Query: 74 LGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAV-GTIMGAVPLLTDALTQLLEAHPT 132 +G ++ +AR+ +R E+ QG G + + + L +AL+ L HP Sbjct: 62 VGKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPN 121 Query: 133 LSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVASVQHPLAA 192 +++++ E S ++ L +G +D+ I S+ ++ F H++ L +V + HPL+ Sbjct: 122 VNIDLEERLSFEIVSALTEGTIDIGILSDSVDFSG--FETFPFHDDRLTLVVARDHPLSV 179 Query: 193 APSLQLADLADSRWV 207 S+ A+ D ++ Sbjct: 180 RSSIHFAETLDYDFI 194 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 9/217 (4%) Query: 15 LHLRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATEL 74 + LRQLR + +A+ +AA ++ +TQP S+A+Q +E+ LG QLF RT+R + T Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 75 GHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGA-VPLLTDALTQLLEAHPTL 133 G ++ A+ I L + M + G GRL++ + A +L L + E++P + Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122 Query: 134 SVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDL-YDAFNIHEEELAVVASVQ-HPLA 191 +++ E T+ L L QGR+D+ + + + L D + E L + A L Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALK 182 Query: 192 AAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADL 228 S+ L LA+ +++ P R+ FHDA L Sbjct: 183 GKQSVALQSLAELPLIIF----PRRIA--PAFHDAIL 213 >gi|134093718|ref|YP_001098793.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 12/174 (6%) Query: 21 RLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATELGHCVIR 80 R + + GS + AA ++ +TQ + +Q +ES LG LF R G T+ G +R Sbjct: 7 RTFLYIVRSGSFIAAATRLHVTQTTVTARVQNLESQLGCSLFVRNRAGARLTDDGERFVR 66 Query: 81 YA-RLIQTDLTHLREEMLSIMQGHGGRLAVGTIMG-AVPLLTDALTQLLEAHPTLSVEIV 138 YA +L+QT R+ L + G+G LA+G+ + PL+ QL A P+ ++ + Sbjct: 67 YASQLVQTWDAARRD--LPLPDGYGDSLALGSEVSLCNPLMLQWTMQLRRALPSHAIRVE 124 Query: 139 EDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIH---EEELAVVASVQHP 189 + L L+ G LD A+ RP + + EE+L +AS ++P Sbjct: 125 VGDGSSLQSKLEHGLLDAALV-----YRPVYWTGMQVEQLLEEKLVQIASTKNP 173 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 27/240 (11%) Query: 15 LHLRQLRLL-IALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEA-T 72 ++L QLR + A+ + +L +AA+ + +QPG SKA+ E+E LG +F+R + + T Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 73 ELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMG----AVPLLTDALTQ--- 125 E G V++ I ++ L+ G + T ++P + A TQ Sbjct: 61 EPGRAVLKSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 126 -----LLEAHPTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEEL 180 LL+ +P E+V L+DQ DLAI +I+ L + ++ E Sbjct: 121 KVRLSLLQGNPKQIAEMV---------LMDQA--DLAIATEAIANMDGLI-SLPCYQWEH 168 Query: 181 AVVASVQHPLAAAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSA 240 +V + HPL + S+ L +LA + Y + R ++ F+ +L+ P L+E A Sbjct: 169 QIVLPLDHPLLKSKSITLEELAAYPIITYDSAFAGRNKIDHAFNLRNLK-PDILLEAIDA 227 >gi|134096588|ref|YP_001101663.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 312 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 2/231 (0%) Query: 15 LHLRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATEL 74 + +RQL L+ LA +AAE ++QP S A++ +E+ LG + R R T Sbjct: 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGVAIVQRGQRFQGFTPE 60 Query: 75 GHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLTDALTQLLEAHPTLS 134 G ++ +AR L +R+E G L +G I +P+++ H L Sbjct: 61 GERILDWARQTLAALEGMRQEASMSRVKLSGTLRLGAIPTTMPIVSLLTGPCRAQHADLR 120 Query: 135 VEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVASVQHPLAAAP 194 ++ ++ ++R LD LD+ + QR + ++ E ++A Q + Sbjct: 121 QRVLSLSTEEIMRRLDDFELDIGLTYLE-DQRLSGFHVQPLYRERYMLLARDQLAMGDRT 179 Query: 195 SLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLS 245 + D A+ + +A+M R ++ F AD++ P +ET S F S Sbjct: 180 EISWEDAAELPLCLLTAHMQNRRIVDAAFRRADVQ-PNVAVETDSVFALYS 229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 498,682 Number of extensions: 17286 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 12 Length of query: 314 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 232 Effective length of database: 730,157 Effective search space: 169396424 Effective search space used: 169396424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)