BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0153.p
         (212 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096292|ref|YP_001101367.1| putative peroxiredoxin [Hermini...   382   e-108
gi|134093319|ref|YP_001098394.1| alkyl hydroperoxide reductase s...    55   3e-09

>gi|134096292|ref|YP_001101367.1| putative peroxiredoxin
           [Herminiimonas arsenicoxydans]
          Length = 213

 Score =  382 bits (982), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/212 (84%), Positives = 197/212 (92%)

Query: 1   MTLRLGDTAPDFEQESSIGKIKFHDWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD 60
           MTLRLGD APDFEQ+SSIGKIKFH+WAGDSWVVLFSHPADFTPVCTTELGLTAKLKP+FD
Sbjct: 2   MTLRLGDIAPDFEQDSSIGKIKFHEWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPQFD 61

Query: 61  KRNVKAIALSVDGAEAHNQWIKDIEETQQTVVGFPIVADVDKKVAGLYDMIHPNQSETAT 120
           KRNVKAIALSVD A+ H +WIKDIE TQ+TVVGFPIVAD DK V+ LYDMIHPNQS TAT
Sbjct: 62  KRNVKAIALSVDPADQHLEWIKDIEATQKTVVGFPIVADADKSVSTLYDMIHPNQSATAT 121

Query: 121 VRSLFIIDPKKKVRLIITYPMSTGRNFDEVLRVIDALQLTDGYTVATPGNWKDGDDVIIP 180
           VRS+FIIDP+KK+RL +TYPMS GRNFDE+LR IDALQLTD YTVATPGNW+DGDDVIIP
Sbjct: 122 VRSVFIIDPQKKIRLTLTYPMSVGRNFDEILRAIDALQLTDNYTVATPGNWRDGDDVIIP 181

Query: 181 LTVKDEEVIKQKYPKGYKAPRPYLRITPQPNK 212
           L+++DE VIKQK+PKGYKA RPYLR+TPQPNK
Sbjct: 182 LSIQDEAVIKQKFPKGYKAERPYLRVTPQPNK 213


>gi|134093319|ref|YP_001098394.1| alkyl hydroperoxide reductase
           subunit C [Herminiimonas arsenicoxydans]
          Length = 187

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 31  WVVLFSHPADFTPVCTTELGLTAKLKPEFDKRNVKAIALSVDGAEAHNQWIKDIEETQQT 90
           W VL   PA FT  C TE+   A    EF K   +   ++ D   +H  W     ET   
Sbjct: 33  WSVLIFMPAAFTFNCPTEVEDAADSYAEFQKLGAEVYIVTTDTHFSHKVW----HETSPA 88

Query: 91  V--VGFPIVADVDKKVAGLYDMIHPNQSETATVRSLFIIDPKKKVRLIITYPMSTGRNFD 148
           V    FP+V D    +   + +  P       +R  F+I+P+  ++ +  +  +  R+  
Sbjct: 89  VGKAKFPLVGDPTHALTNAFGVHIPEAG--LALRGTFVINPEGVIKTMEVHDNAIARDVS 146

Query: 149 EVLRVIDALQLTDGY-TVATPGNWKDGDDVIIP 180
           E LR + A +    +     P  WK+G+  I P
Sbjct: 147 ETLRKLKAAKYVAEHPNEVCPAKWKEGEKTIAP 179


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 439,536
Number of extensions: 17305
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 134
Effective length of database: 743,337
Effective search space: 99607158
Effective search space used: 99607158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)