BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0152.p
         (596 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096293|ref|YP_001101368.1| thiol:disulfide interchange pro...   611   e-176
gi|134094819|ref|YP_001099894.1| putative Thiol:disulfide interc...    75   7e-15

>gi|134096293|ref|YP_001101368.1| thiol:disulfide interchange
           protein, cytochrome c-type biogenesis, electron carrier,
           N-terminal interacts with and activates DsbC
           [Herminiimonas arsenicoxydans]
          Length = 586

 Score =  611 bits (1575), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 340/570 (59%), Positives = 424/570 (74%), Gaps = 18/570 (3%)

Query: 34  QAADDYLPPEQAFQLSGRMVDAQTLELSYRIADGYYMYRDRFHFSAEGATLGQPQFPAGK 93
            A +D+L PE AFQ S RMVD +T+ ++Y IADGYYMYR+RF F A  A LG+   PAGK
Sbjct: 19  HADEDFLAPEIAFQFSARMVDTKTIAVTYAIADGYYMYRERFAFKASDAALGEAVIPAGK 78

Query: 94  RKYDENFQKEVETYHQSVTVRVPVSGEVKDFVVLAVSQGCADKGLCYPPMTLKLSMSAQA 153
            ++D+ FQK+VETY +SVT+R+PV    + F + A SQGC+DKGLCY PM  + ++ AQ 
Sbjct: 79  VEFDQTFQKDVETYRKSVTIRIPVQASGR-FTLTASSQGCSDKGLCYSPMDSQANLFAQG 137

Query: 154 IG-QSVSP-----VGTGAETAASG---GSDVDRITAVLKAGKLWPILTLFFLLGIGLSFT 204
            G +S +P     + + ++ A       ++  RI   L++G+L  IL LF LLG+GL+FT
Sbjct: 138 DGAKSGAPDKGLKILSASDDATKNVVLDAETGRIERALQSGELLAILPLFLLLGLGLAFT 197

Query: 205 PCVLPMLPILSSIIVGQQPAKGGGRGRSFLLSLDYSLGMILIYTALGVVAGMLGEGLSAY 264
           PCVLPM+PILSSII+G+       R R  LL++ YSLGM L+YT LG+ AG +GEGLSA 
Sbjct: 198 PCVLPMVPILSSIIIGEGAQTK--RSRGLLLAVVYSLGMALVYTCLGLAAGWVGEGLSAA 255

Query: 265 LQNPWVLAAFALLMAGLALSMFDLYTLQVPASLQSRLSTASGGGS-GKWLGVFVMGAISA 323
           LQNPWVL+ FA+LM GLALSMFD+Y LQ+PA +Q RL+ AS   S GK +GVFVMGA+SA
Sbjct: 256 LQNPWVLSGFAILMVGLALSMFDVYHLQMPAFVQHRLTRASERQSAGKLVGVFVMGALSA 315

Query: 324 LIVGPCVAAPLAGALLYISQTGDVVLGGSALFAMAAGMSVPLLLIGASAGALLPRAGAWM 383
           LIVGPCVAAPLAGALLYISQT D+V+GGSALFAMA GMSVPLLL+GASAG LLPR GAWM
Sbjct: 316 LIVGPCVAAPLAGALLYISQTRDLVIGGSALFAMAIGMSVPLLLVGASAGTLLPRTGAWM 375

Query: 384 DAVKRFFGVLMLGTALWMVAPVIPAWLQVAGWAALGIGYGAFLLWTRPAGWMSRALGLAV 443
           + VKRFFGVLML  A+WM++PVIPA +Q+   AALG+ YGA+LLW     W ++ALGL  
Sbjct: 376 NGVKRFFGVLMLALAIWMISPVIPAVVQMLALAALGLAYGAYLLWGAKGSWFAKALGLVF 435

Query: 444 VTLGLLQLVSVATGGRDPLAPLSHLRGQAVATGATDFVRIRSSAELDAALQQNAAGERRP 503
             LG +QLV V+TGGRD  APL+HL    V      FVR+++SAELDAA+ Q A G+   
Sbjct: 436 AILGAMQLVGVSTGGRDAWAPLAHLSADGVRKPV--FVRVKTSAELDAAIAQ-AGGKN-- 490

Query: 504 VMLDFYADWCVSCKEMERFTFTDPRVKERFGQMLLLQIDVTANNADDRAMLKRFKLFGPP 563
           VMLDFYADWCVSC EME+FTFTDPRV  +F  M+LLQ+DVTANNA D+ ML+RF LFGPP
Sbjct: 491 VMLDFYADWCVSCIEMEKFTFTDPRVHAQFADMVLLQVDVTANNAYDKEMLRRFNLFGPP 550

Query: 564 GIMFFDGDGRELTSRRVIGYQDADRFISTL 593
            I+FFD +G+E+   RVIG+Q AD+F  +L
Sbjct: 551 AIIFFDKNGQEIRGGRVIGFQKADKFTQSL 580


>gi|134094819|ref|YP_001099894.1| putative Thiol:disulfide
           interchange protein DsbD (partial) [Herminiimonas
           arsenicoxydans]
          Length = 167

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 7/119 (5%)

Query: 38  DYLPPEQAFQLSGRMVDAQTLELSYRIADGYYMYRDRFHFS---AEGATLGQPQFPAGKR 94
           + L PEQAF+L      + TL      A+GYY+Y+DR  F+   A G  +   + P G+ 
Sbjct: 48  ELLEPEQAFRLKTTFKGSATLIAELLPAEGYYLYKDRIRFAISDANGVVIKTVRLPVGEI 107

Query: 95  KYDENFQKEVETYHQSVTVRVPV--SGEVKDFVVLAVSQGCADK-GLCYPPMTLKLSMS 150
           K+D  F K +E Y + V V + +  + ++K F ++A  QGC +K G+CYPP+   L+++
Sbjct: 108 KHDRTFGK-MEVYKRPVPVEIDLASTSKIKKFTLIASYQGCHEKTGVCYPPINKTLNLA 165


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 983,728
Number of extensions: 37734
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 2
Length of query: 596
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 509
Effective length of database: 713,682
Effective search space: 363264138
Effective search space used: 363264138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)