BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0151.p
         (115 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096294|ref|YP_001101369.1| periplasmic divalent cation tol...   115   5e-28

>gi|134096294|ref|YP_001101369.1| periplasmic divalent cation
           tolerance protein; cytochrome c biogenesis
           [Herminiimonas arsenicoxydans]
          Length = 113

 Score =  115 bits (288), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 73/112 (65%)

Query: 4   SLLNQPLLVLANVPDQAVAERIADALVEQGLAACVNILAPARSVYRWQGKVQRDTELPLL 63
           SL  Q LLVL NVPD  VAER+A AL+E  LAACVNIL   RS+Y WQG ++   E  L 
Sbjct: 2   SLSPQALLVLTNVPDADVAERLARALLEARLAACVNILPVVRSLYHWQGVLEEACEATLQ 61

Query: 64  IKTTQARYQELEQAIVQLHPYDVPEIIALPITAGLPAYLAWMQDETARPLRV 115
           IKT  A Y  LE AI  +HPY VPEIIA+PI  GL AYL W+  ET +   V
Sbjct: 62  IKTIPAHYAALEAAIKAIHPYAVPEIIAIPIVDGLHAYLHWIAQETNKDTNV 113


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 219,908
Number of extensions: 7835
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 45
Effective length of database: 769,697
Effective search space: 34636365
Effective search space used: 34636365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)