BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0146.p
         (134 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096298|ref|YP_001101373.1| 30S ribosomal protein S11 [Herm...   229   4e-62

>gi|134096298|ref|YP_001101373.1| 30S ribosomal protein S11
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score =  229 bits (584), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 123/123 (100%)

Query: 12  RVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVA 71
           RVRKKVKKNVAEGIAH+HASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVA
Sbjct: 12  RVRKKVKKNVAEGIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVA 71

Query: 72  AESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTPVPHNGCRPPKR 131
           AE+AGKVAIECGIKNLEVRIKGPGPGRES+VRALNNLGIKITQIQDVTPVPHNGCRPPKR
Sbjct: 72  AEAAGKVAIECGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIQDVTPVPHNGCRPPKR 131

Query: 132 RRI 134
           RRI
Sbjct: 132 RRI 134


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 225,937
Number of extensions: 7711
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 62
Effective length of database: 763,107
Effective search space: 47312634
Effective search space used: 47312634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)