BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0142.p
         (443 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096301|ref|YP_001101376.1| preprotein translocase membrane...   834   0.0  

>gi|134096301|ref|YP_001101376.1| preprotein translocase membrane
           subunit [Herminiimonas arsenicoxydans]
          Length = 443

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/443 (91%), Positives = 430/443 (97%)

Query: 1   LATTPQLAKGAAKGFPWGRLWFLLGALIVYRIGAHIPVPGIDPTQLAQLFKQNQGGILGM 60
           +ATTPQLAKGA+ GFPW RLWFLLGALIV+RIGAHIPVPGI+P +LAQLFKQNQGGILGM
Sbjct: 1   MATTPQLAKGASNGFPWNRLWFLLGALIVFRIGAHIPVPGINPDELAQLFKQNQGGILGM 60

Query: 61  FNMFSGGALSRFTIFALGIMPYISASIIMQLLSVVSPQLEALKKEGEAGRRKITQYTRYG 120
           FNMFSGGALSRFT+FALGIMPYISASIIMQL+SVVSPQ+EALKKEGE+GRRKITQYTRYG
Sbjct: 61  FNMFSGGALSRFTVFALGIMPYISASIIMQLMSVVSPQMEALKKEGESGRRKITQYTRYG 120

Query: 121 TLVLATFQALGIAVALESQAGLVLDPGLAFRLTTVVTLITGTMFLMWLGEQITERGLGNG 180
           TL+LATFQ LGIAVALESQA LV+DPG+AFRLTTV+TL+TGTMFLMWLGEQITERGLGNG
Sbjct: 121 TLLLATFQGLGIAVALESQANLVIDPGMAFRLTTVITLVTGTMFLMWLGEQITERGLGNG 180

Query: 181 ISIIIFAGIAAGLPNALGGLFELVRTGSMNALSAILICAIVGLVTFLVVFIERGQRKILV 240
           ISIIIFAGIAAGLP+A+ GLFELVRTGSMNALSAILIC +V  VT+LVVFIERGQRKILV
Sbjct: 181 ISIIIFAGIAAGLPSAVAGLFELVRTGSMNALSAILICLVVAAVTYLVVFIERGQRKILV 240

Query: 241 NYAKRQVGNKIYGGQSSHLPLKLNMAGVIPPIFASSIILFPATITSWFTSGDTSNPFIRF 300
           NYAKRQVGNKIYGGQSSHLPLKLNMAGVIPPIFASSIILFPATITSWFTSG+T++PF+RF
Sbjct: 241 NYAKRQVGNKIYGGQSSHLPLKLNMAGVIPPIFASSIILFPATITSWFTSGETTSPFVRF 300

Query: 301 LKDLAASMAPGEPIHALLYAVAIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQT 360
           LKDLAASMAPGEPIHALLYA AIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQT
Sbjct: 301 LKDLAASMAPGEPIHALLYAAAIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQT 360

Query: 361 ARYIDKILMRLTLAGAVYITLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQN 420
           ARYIDKIL RLTLAGAVYITLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQN
Sbjct: 361 ARYIDKILTRLTLAGAVYITLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQN 420

Query: 421 YVMSQQYESLLRKANFKGGMTPR 443
           YVMSQQYESLLRKANFKGG+  R
Sbjct: 421 YVMSQQYESLLRKANFKGGIPTR 443


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 806,961
Number of extensions: 31833
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 358
Effective length of database: 720,272
Effective search space: 257857376
Effective search space used: 257857376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)