BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0141.p
         (144 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096302|ref|YP_001101377.1| 50S ribosomal protein L15 [Herm...   255   5e-70

>gi|134096302|ref|YP_001101377.1| 50S ribosomal protein L15
           [Herminiimonas arsenicoxydans]
          Length = 143

 Score =  255 bits (652), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/143 (89%), Positives = 137/143 (95%)

Query: 1   MQLNTIQPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60
           M+LNTIQPA+GAKH KRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR
Sbjct: 1   MELNTIQPADGAKHYKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60

Query: 61  LPKRGFKSLATPYKAEVRLSDLEKLPVAEIDVLALKQAGLVSELARVVRIIKAGELTKKV 120
           LPKRGFKSLATPYKAEVRLSDLE LPV EID+LALKQAG++ ELARVVR+I +GELTKKV
Sbjct: 61  LPKRGFKSLATPYKAEVRLSDLEALPVTEIDILALKQAGVIGELARVVRVILSGELTKKV 120

Query: 121 TVKGLIATAGAKAAIEAAGGSIA 143
           T+KGLIAT GAKAAIEAAGGS+A
Sbjct: 121 TLKGLIATKGAKAAIEAAGGSVA 143


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 246,630
Number of extensions: 10429
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 71
Effective length of database: 759,812
Effective search space: 53946652
Effective search space used: 53946652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)