BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0139.p
         (172 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096304|ref|YP_001101379.1| 30S ribosomal protein S5 [Hermi...   321   1e-89

>gi|134096304|ref|YP_001101379.1| 30S ribosomal protein S5
           [Herminiimonas arsenicoxydans]
          Length = 172

 Score =  321 bits (823), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/172 (93%), Positives = 169/172 (98%)

Query: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAKMQSK QS+KPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK
Sbjct: 1   MAKMQSKMQSEKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60

Query: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAMEEARRK+IKVTLKNGT+QHTV GKHGASSV++ PAK+GTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMLPAKEGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG 172
           FEVMGVTNVVAKSTGSTNPYNMVRATL+GL+KMNTP+EIAAKRGKSVEEILG
Sbjct: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLEGLAKMNTPSEIAAKRGKSVEEILG 172


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.130    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 290,101
Number of extensions: 10115
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 96
Effective length of database: 749,927
Effective search space: 71992992
Effective search space used: 71992992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)