BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0134.p
         (179 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096309|ref|YP_001101384.1| 50S ribosomal protein L5 [Hermi...   347   3e-97

>gi|134096309|ref|YP_001101384.1| 50S ribosomal protein L5
           [Herminiimonas arsenicoxydans]
          Length = 179

 Score =  347 bits (889), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/179 (93%), Positives = 175/179 (97%)

Query: 1   MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60
           MARLQ+FYK+KVV DLT K++YKS MEVPRILKITLNMGLSEA+ADKKIIEHAVGDLTKI
Sbjct: 1   MARLQEFYKEKVVGDLTAKFAYKSAMEVPRILKITLNMGLSEAIADKKIIEHAVGDLTKI 60

Query: 61  AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120
           AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGA+MYEFLDR ITVALPRVRDFRG+SG+
Sbjct: 61  AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGAQMYEFLDRFITVALPRVRDFRGISGK 120

Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179
           AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN
Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 280,478
Number of extensions: 10839
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 103
Effective length of database: 749,927
Effective search space: 77242481
Effective search space used: 77242481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)