BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0131.p
         (90 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096312|ref|YP_001101387.1| 30S ribosomal protein S17 [Herm...   154   7e-40

>gi|134096312|ref|YP_001101387.1| 30S ribosomal protein S17
          [Herminiimonas arsenicoxydans]
          Length = 90

 Score =  154 bits (389), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 80/90 (88%)

Query: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKA 60
          MNDQVKQALKRTLIGKVVSDKMDKTVTV IER +KHPLYGKII R+ KYHAH+E N AKA
Sbjct: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSNKYHAHNEGNQAKA 60

Query: 61 GDVVEITESRPISKTKSWTVTRVVQEAQIV 90
          GD VEI E RPISKTK+WTVTRVVQ AQIV
Sbjct: 61 GDTVEIQEGRPISKTKAWTVTRVVQAAQIV 90


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.126    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 143,302
Number of extensions: 4109
Number of successful extensions: 9
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 90
Length of database: 1,000,347
Length adjustment: 59
Effective length of query: 31
Effective length of database: 805,942
Effective search space: 24984202
Effective search space used: 24984202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 121 (51.2 bits)