BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0124.p
         (206 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096320|ref|YP_001101395.1| 50S ribosomal protein L4 [Hermi...   387   e-109

>gi|134096320|ref|YP_001101395.1| 50S ribosomal protein L4
           [Herminiimonas arsenicoxydans]
          Length = 206

 Score =  387 bits (994), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/206 (88%), Positives = 197/206 (95%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQ++SNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT
Sbjct: 1   MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180
           GRLSV+E  +V+APKTKLL+QKLKGMG++SVLVITDSLDE LLLASRNLP VL+ EPR A
Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180

Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206
           DPVSLV++K +LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 373,597
Number of extensions: 14169
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 129
Effective length of database: 746,632
Effective search space: 96315528
Effective search space used: 96315528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)