BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0121.p (396 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiim... 743 0.0 gi|134096323|ref|YP_001101398.1| elongation factor Tu [Herminiim... 743 0.0 gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor f... 77 1e-15 gi|134095573|ref|YP_001100648.1| ATP-sulfurylase subunit 1 [Herm... 74 1e-14 gi|134095610|ref|YP_001100685.1| translation initiation factor I... 67 1e-12 >gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/396 (93%), Positives = 382/396 (96%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK YDQID APEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINT+HVEYET RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTSHVEYETTTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDEELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LL+RQVGVPYIIVFLNK DMVDD ELLELVEMEVRELLSKYEFPGDDLPI+KGSAKLALE Sbjct: 121 LLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLSKYEFPGDDLPIIKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GD GPLGE AI+ALA+ALD+YIPTPERAVDG FL+PVEDVFSISGRGTVVTGR+ERGI+K Sbjct: 181 GDQGPLGEAAILALADALDSYIPTPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIVK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGE +EIVGI DTQ TTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGESLEIVGIRDTQVTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV LINPIAMEEGLRFAIREGGRTVGAGVVAKI + Sbjct: 361 ITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 >gi|134096323|ref|YP_001101398.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/396 (93%), Positives = 382/396 (96%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK YDQID APEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINT+HVEYET RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTSHVEYETTTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDEELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LL+RQVGVPYIIVFLNK DMVDD ELLELVEMEVRELLSKYEFPGDDLPI+KGSAKLALE Sbjct: 121 LLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLSKYEFPGDDLPIIKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GD GPLGE AI+ALA+ALD+YIPTPERAVDG FL+PVEDVFSISGRGTVVTGR+ERGI+K Sbjct: 181 GDQGPLGEAAILALADALDSYIPTPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIVK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGE +EIVGI DTQ TTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGESLEIVGIRDTQVTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV LINPIAMEEGLRFAIREGGRTVGAGVVAKI + Sbjct: 361 ITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 >gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor family protein [Herminiimonas arsenicoxydans] Length = 612 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 121/279 (43%), Gaps = 25/279 (8%) Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDA-----APEEKARGITINTAHV 68 N+ I HVDHGKTTL + + G + QIDA EK RGITI + + Sbjct: 10 NIAIIAHVDHGKTTLVDQLL-----RQSGTFRDNQQIDARVMDSGDIEKERGITILSKNC 64 Query: 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGV 128 E H VD PGHAD+ + + +D +L+ A +GPMPQTR + +G+ Sbjct: 65 AVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGL 124 Query: 129 PYIIVFLNKADMVDDEELLELVEMEVRELLSKYEFPGD--DLPIVKGSAKLALEGDTGPL 186 I+V LNK D E EL K + D PIV S G T + Sbjct: 125 KPIVV-LNKIDRPGARA--EWAINATFELFDKLGATEEQLDFPIVYASGLNGYAGLTPDV 181 Query: 187 GEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIKVGEEIE 246 + L +A+ ++P + D + + + S G + GR+ G +K +++ Sbjct: 182 RGGNMEPLFDAILEHVPARQDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKALQDVV 241 Query: 247 IVGIADTQKT--------TCTGVEMFRKLLDQGQAGDNV 277 + D + T T G++ R L+D+ AGD V Sbjct: 242 WMNGPDDKPTKARINQVLTFKGLD--RVLVDEALAGDIV 278 >gi|134095573|ref|YP_001100648.1| ATP-sulfurylase subunit 1 [Herminiimonas arsenicoxydans] Length = 443 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 79/321 (24%), Positives = 141/321 (43%), Gaps = 57/321 (17%) Query: 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPE--------------------- 55 T G VD GK+TL + F + DQ+DA Sbjct: 27 TAGSVDDGKSTLIGRLL------FDSKGIFADQLDAMSRAKHKRTVGDTIDLSLLTDGLE 80 Query: 56 -EKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA----- 109 E+ +GITI+ A+ + T R + D PGH Y +NM+TGA+ D I++ + Sbjct: 81 AEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILIDVSKVKLG 140 Query: 110 -DGP---MPQTREHILLSRQVGVPYIIVFLNKADMVD-DEELLELV---EMEVRELLSKY 161 DG + QT+ H ++ + + ++IV +NK D+V+ D+++ + + +E + L Sbjct: 141 DDGSVELLIQTKRHSTIAHLLQIEHVIVAVNKMDLVNYDQKVYDRIVAAYVEFAKTLGLK 200 Query: 162 EFPGDDLPIVKGSAKLALEGDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVF 221 + L + G + G ++ L E+L Y + + D F PV+ V Sbjct: 201 DIHPIPLSALAGDNVVTRGDKLGWYQGPTLIELLESLSVY----DESHDEPFRFPVQLVA 256 Query: 222 SISG------RGTVVTGRVERGIIKVGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGD 275 +G RG + GR+E G ++ G+ ++V Q T ++ F ++Q G Sbjct: 257 RHNGHEADDFRGYM--GRIEAGKVRKGD--KLVVQPSGQTATVKDIQTFDGSIEQAVVGQ 312 Query: 276 NVGVLLRGTKREDVQRGQVLA 296 ++ +LL + D+ RG +L+ Sbjct: 313 SITLLLE--EHVDISRGDMLS 331 >gi|134095610|ref|YP_001100685.1| translation initiation factor IF-2 [Herminiimonas arsenicoxydans] Length = 941 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 106/232 (45%), Gaps = 33/232 (14%) Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARGITINTAHVEYETAN 74 V +GHVDHGKT+L I +K GEA GIT + ET Sbjct: 446 VTVMGHVDHGKTSLLDYIRR--AKVATGEAG--------------GITQHIGAYHVETPR 489 Query: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIIVF 134 +D PGH + GA D ILV +A DG MPQT+E I ++ GVP ++V Sbjct: 490 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVP-LVVA 548 Query: 135 LNKADMVDDEELLELVEME-VRELLSKYEFPGDDLPIVKGSAKLALEGDTGPLGEQAIMA 193 +NK D L+ V+ E + E + E+ GD P V SAK EG L EQ ++ Sbjct: 549 INKIDKPSAN--LDRVKQELIAEQVVPEEYGGDS-PFVPVSAKTG-EG-IDALLEQVLLQ 603 Query: 194 LAEALDTYIP--TPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIKVGE 243 AE L+ P +P R + V + GRG V T V+ G ++ G+ Sbjct: 604 -AEVLELKAPVVSPARGL-------VVEAKLDKGRGPVATILVQSGTLRRGD 647 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 702,681 Number of extensions: 26975 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 8 Length of query: 396 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 312 Effective length of database: 723,567 Effective search space: 225752904 Effective search space used: 225752904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)