BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0119.p
         (156 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096325|ref|YP_001101400.1| 30S ribosomal protein S7 [Hermi...   301   1e-83

>gi|134096325|ref|YP_001101400.1| 30S ribosomal protein S7
           [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  301 bits (771), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 145/156 (92%), Positives = 154/156 (98%)

Query: 1   MPRRREVPKREILPDPKFGNVEVAKFVNVLMLSGKKSVAENIIYGAFDHIQSKSGKDPLE 60
           MPRRREVPKR+ILPDPKFGNV+VAKFVNVLMLSGKKSVAENIIYGAF+HIQ+KSGKDPLE
Sbjct: 1   MPRRREVPKRDILPDPKFGNVDVAKFVNVLMLSGKKSVAENIIYGAFEHIQTKSGKDPLE 60

Query: 61  VFSAALNNCKPMVEVKSRRVGGANYQVPVEVRPVRRMALSMRWLREAANKRSEKSMPQRL 120
           VF+AA+ NCKP+VEVKSRRVGGANYQVPVEVRPVRRMALSMRWLREAANKRSEKSMPQRL
Sbjct: 61  VFTAAILNCKPLVEVKSRRVGGANYQVPVEVRPVRRMALSMRWLREAANKRSEKSMPQRL 120

Query: 121 AGELMEAAEGRGGAMKRRDEVHRMAEANKAFSHFRF 156
           AGEL+EAAE RGGAMK+RDEVHRMAEANKAFSHFRF
Sbjct: 121 AGELLEAAESRGGAMKKRDEVHRMAEANKAFSHFRF 156


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 280,568
Number of extensions: 9999
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 82
Effective length of database: 756,517
Effective search space: 62034394
Effective search space used: 62034394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)