BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0116.p (752 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 82 1e-16 gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [... 63 6e-11 gi|134096594|ref|YP_001101669.1| putative TonB-dependent outer m... 62 9e-11 gi|134096120|ref|YP_001101195.1| outer membrane receptor protein... 56 8e-09 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 161/736 (21%), Positives = 280/736 (38%), Gaps = 136/736 (18%) Query: 41 RKLQDVVVTANRAGSTDLDHAAATVSVITSQEMEEHNTKDIKDALRYEPGVEVRRSVYRM 100 +L+++VV+A+ ++ +A A+++VIT +E++ + I +AL GV+V SV + Sbjct: 55 HQLKEIVVSAS-GFEQEIKNAPASITVITREELQSNRVNSIAEALSNVEGVDVTSSVGKT 113 Query: 101 SGITGASATTGRGGNEGITMRGLDGNRVLMLEDGI-------VMPRAFSQGVASVGRGAT 153 G++ I MRGL L+L DG V+P F ++ Sbjct: 114 GGLS-------------IQMRGLGSAYTLILIDGRRQNPAGNVVPNGFGDSASTF----M 156 Query: 154 TDTELYRRIEVLRGPASSLYGSDGLTGAINFITKDPADLLG--VYGKSTYFSFKPSYDSV 211 RIEV+RGP ++LYGSD + G IN IT+ G V ++T DS Sbjct: 157 PPPSAIERIEVIRGPMATLYGSDAIGGVINIITRKVGKTWGGTVTAETTMHEHSEYGDS- 215 Query: 212 DKSFGATASTAWGGEQWQGMLILNTRHGN--------QADNKGTNDVLGTARTTPDPMSY 263 S G G+L L R Q KG+ D T T DP+S Sbjct: 216 -----RAGSLYLSGPLVDGLLGLQVRARKYKRDASDIQWPGKGSGD-FPTLNTGRDPVSG 269 Query: 264 TNRSALGKLVFKPNGVDSFKLTLQATEERDSGDSLSALANGVTAYSTSSKSTGQRATLAY 323 + +L F PN L + +++ S GQ T++Y Sbjct: 270 DVNTVGARLSFTPNKNHDLYLDVDQVKQK------------------YDNSRGQIGTISY 311 Query: 324 EHVDPDQPWMQKFKANLYYRNADTDQYTF-EAGASSRTIVRPRFRDVSYSDQMIGGGLLG 382 VDP + + + + DQ T S +++ VS++ G L+ Sbjct: 312 --VDPTKGNRLQIPGYGPQQEFNRDQVTLAHTWRLSNSVLE---SSVSHNKTETLGRLI- 365 Query: 383 ESNFGPDGWRHKL----VYGLDLSLSTLQTSANGTGWTSCTGTQYC----QYF------- 427 PDG H + G L + Q++ + W + G QY Sbjct: 366 PGQLRPDGTVHTAPPGKIPGTPRVLES-QSTIFDSKWVTSIGNNMLTLGGQYLDAEMVEG 424 Query: 428 ---PKTEYTQLGAYVQDEMRTGALTTIAGLRLDSYELKPKASAKYDAQASANGQPAVSSR 484 K +Y Q + ++E R +R D L ++D ++ G Sbjct: 425 LATSKFKYDQTSVFAENEWR---------MRKD---LALTVGVRHDDHSTFGG------- 465 Query: 485 DSAFSPRLAFLYEVTPAFIPYIQYARGFRSPSPQEVNSFFNNTV---------YRQVSNP 535 A +PR ++ + ++G+R+P +++ F+ V Q NP Sbjct: 466 --ATTPRAYLVWNANDYWTVKGGISKGYRTPGLEQL---FDGVVGYGRQGDPTRPQWGNP 520 Query: 536 DLKPETSNTVEVGLRGKLAAGGGSLRYSAAAYKGNYRNFI---DLVTVGGNLTVANPTIF 592 +LKPE S + E+G R G G ++A + + + I + GN T A+ +I Sbjct: 521 NLKPEKSTSTELGFRFDDLKGFG---FNATIFNTDLEDAIGSQTFTDINGN-TNASRSI- 575 Query: 593 QYRNAAKAEIHGLEGRIDYAMDNGVSLKGGVAWTKG-TTTANGVEQGLESVAPLSLVTGV 651 N A + G+E + L +T T Q L + + T V Sbjct: 576 ---NVDSASVRGVELGTIWQFAPAWKLNANYTFTDSEQKTGANKGQPLNNTSRHVFNTKV 632 Query: 652 RYEPTSTWFVQSDLIYNAAKKKADIPTSTNFVS-----PAFFVMDLSGGYHLSRNMTLYA 706 + + + + YN+ + + TN + A+ +++L Y ++++ T+ Sbjct: 633 NWHYSQNLGLWAQHSYNSERFRDKDVAGTNTKALLGNYKAYHMLNLGADYKVNKSWTINM 692 Query: 707 GIRNLFDRKYWSWTDI 722 I NL D+ + + ++ Sbjct: 693 AINNLLDKDFAKYPNV 708 >gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 622 Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 27/177 (15%) Query: 11 AVLMALQQWLCAGAFAQSADVNSNPASVSGRKLQDVVVTANRAGSTDLDHAAATVSVITS 70 A+++++ +FAQ+A S + L+ VVVTA+R D A + VIT+ Sbjct: 17 AIVLSISAAFSPLSFAQTA---------SDQSLEPVVVTASRTVQKASDVLADNI-VITA 66 Query: 71 QEMEEHNTKDIKDALRYEPGVEVRRSVYRMSGITGASATTGRGGNEGITMRGLDGNRVLM 130 +E+++ + D L+ + GVE+ R+ G G + + +RG + +V++ Sbjct: 67 EEIQQSGQTSLIDLLQKKRGVEITRN-------------GGAGNSSSVFLRGSNSKQVVL 113 Query: 131 LEDGIVMPRAFSQGVASVGRGATTDTELYRRIEVLRGPASSLYGSDGLTGAINFITK 187 L DG+ R+ S + A +++ R+E++ GP SS+YG+D + G I TK Sbjct: 114 LIDGV---RSVSSTLGDATWSAIPLSQI-DRVEIVFGPMSSMYGADAVGGVIQVFTK 166 >gi|134096594|ref|YP_001101669.1| putative TonB-dependent outer membrane receptor [Herminiimonas arsenicoxydans] Length = 672 Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 10/231 (4%) Query: 486 SAFSPRLAFLYEVTPAFIPYIQYARGFRSPSPQEVNSFFNNTVYRQVSNPDLKPETSNTV 545 SAF+P+ +Y ++ Y+ AR R P+ + + ++ + + +PDL E + Sbjct: 431 SAFNPQAGLIYHLSDTGNAYLTVARKSRMPT---IKNRYSGGLGTTIPSPDLNVERAINY 487 Query: 546 EVGLRGKLAAGGGSLRYSAAAYKGNYRNFIDLVTVGGNLTVANPTIFQYRNAAKAEIHGL 605 + G+ KL A R A+ + + + + + V G + Q +N K I G+ Sbjct: 488 QFGISEKLTA---KTRVDASVFYSDVTDMMQSIEVPGTVCNNGNLCKQMQNIGKVSIKGI 544 Query: 606 EGRIDYAMDNGVSLKGGVAWTKGTTTANGVEQGLESVAPLSLVTGVRYEPTSTWFVQSDL 665 E +D A+ + L G + + ++ + L V LV ++ V ++ Sbjct: 545 ELSMDSAVTRTLDLGGSYTYVERDNKSDPAKL-LTEVPAHKLVAYAKWAAMPKLNVIANA 603 Query: 666 IYNAAKKKADIPTSTNFVSPAFFVMDLSGGYHLSRNMTLYAGIRNLFDRKY 716 YN+ + D T V+ F +++ Y L +++TL AG+ N+FDR Y Sbjct: 604 EYNSRRYTNDTGTR---VAAGFTLVNAKLSYALQKDVTLEAGVNNMFDRNY 651 >gi|134096120|ref|YP_001101195.1| outer membrane receptor protein [Herminiimonas arsenicoxydans] Length = 668 Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 31/182 (17%) Query: 5 KSRCAAAVLMALQQWLCAGAFAQSADVNSNPASVSGRKLQDVVVTANRAGSTDLDHAAAT 64 ++ A+AVL AL L FAQ+ + + L VVVT+ + + A Sbjct: 5 RTLLASAVLSALAS-LPHSVFAQAQE----------QTLSAVVVTSTPFSNDEGAQILAP 53 Query: 65 VSVITSQEMEEHNTKDIKDALRYEPGVEVRRSVYRMSGITGASATTGRGGNEGITMRGLD 124 V+ E+ E + D L E GV +++ G G + I +RGL+ Sbjct: 54 AKVLYGDELREKLGNSLGDTLSQELGV--------------SASAFGAGASRPI-IRGLE 98 Query: 125 GNRVLMLEDGI-VMPRAFSQGVASVGRGATTDTELYRRIEVLRGPASSLYGSDGLTGAIN 183 G RV +L++G+ VM + +VG A+T R++E+LRGPA+ LYGS + G +N Sbjct: 99 GPRVKILQNGMSVMDASSLSNDHAVGGEAST----ARQVEILRGPAALLYGSGAIGGVVN 154 Query: 184 FI 185 I Sbjct: 155 II 156 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,450,528 Number of extensions: 62295 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 5 Length of query: 752 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 663 Effective length of database: 707,092 Effective search space: 468801996 Effective search space used: 468801996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)