BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0115.p (1413 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096327|ref|YP_001101402.1| DNA-directed RNA polymerase sub... 2672 0.0 >gi|134096327|ref|YP_001101402.1| DNA-directed RNA polymerase subunit beta' [Herminiimonas arsenicoxydans] Length = 1414 Score = 2672 bits (6927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1310/1387 (94%), Positives = 1350/1387 (97%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQNEQFDAIKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLK+CQIMSEDDYAAKYEE+GDDF AFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKRCQIMSEDDYAAKYEEFGDDFTAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLR+IDIDR+AE LRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKP+WMIME Sbjct: 181 GAEGIRELLRAIDIDRDAEMLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGL+TTIKAAKKLVE QEPVVWDILE+VIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAIN K EGMMF DVSEVIRAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMMFPDVSEVIRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVELATRITVRI E+PK+ TGEF +TV RYETT+GRAILSEILPKGLPFSVLNRALKKK Sbjct: 541 EVELATRITVRITEYPKNVETGEFEKTVTRYETTVGRAILSEILPKGLPFSVLNRALKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EIS+LIN SFRKCGLRATVVFADQL+QSGFRLATRAGISICVDDMLVP QK +IA AE Sbjct: 601 EISRLINLSFRKCGLRATVVFADQLLQSGFRLATRAGISICVDDMLVPSQKVDIIATAEG 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGD+VGKAMMDQLKVEDV R+G KTTQESF Sbjct: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVTKRDGTKTTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNG++MKALVEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKALVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRVAA DIVNPE Q+TL+ AGTLLDED VEEIER+GIDEVKVRTPLTCDTR+GLCA CY Sbjct: 841 LGRVAANDIVNPETQATLYAAGTLLDEDMVEEIERLGIDEVKVRTPLTCDTRFGLCALCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG +VN+GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR Sbjct: 901 GRDLGRGSMVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKG QIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGL IKAGTALA Sbjct: 961 FTATMRYVTNGKGGQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLVIKAGTALA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGSSSKVMRPQV 1080 TWDPLTRPIITEY+GTVKFENVEEGSTVA+QIDEVTGLSTLVVIDAKRRGS +K +RPQV Sbjct: 1021 TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNEQGEEVKIAGTEH+VTIGFQVGALITVKDGQQV VGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVTVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDM+G KHEFLITKDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRVQVV+ GD NYI GEQVERSELLDENDRV A+GKIPATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVQVVDAGDANYIVGEQVERSELLDENDRVIAQGKIPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGK+DGLRGLKENVIVGRLIPAGTGLAFHRARKEK++WEAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGTGLAFHRARKEKESWEAEE 1380 Query: 1381 RAALLEA 1387 R ALL++ Sbjct: 1381 RTALLQS 1387 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,450,122 Number of extensions: 101353 Number of successful extensions: 316 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 1 Length of query: 1413 Length of database: 1,000,347 Length adjustment: 94 Effective length of query: 1319 Effective length of database: 690,617 Effective search space: 910923823 Effective search space used: 910923823 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)