BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0114.p (1368 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096328|ref|YP_001101403.1| DNA-directed RNA polymerase sub... 2625 0.0 >gi|134096328|ref|YP_001101403.1| DNA-directed RNA polymerase subunit beta [Herminiimonas arsenicoxydans] Length = 1368 Score = 2625 bits (6805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1267/1368 (92%), Positives = 1322/1368 (96%) Query: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQNFLQPERAASERKNEGLQSAFTSI 60 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQ+ESY +FLQ ++ S+RKNEGLQSAFTSI Sbjct: 1 MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYHDFLQEDKIPSQRKNEGLQSAFTSI 60 Query: 61 FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK 120 FPIVSHNGFARLEFLSYVLG PPF++KECQQRGLT+ASPLRAKVRLVILDKESPTKPVVK Sbjct: 61 FPIVSHNGFARLEFLSYVLGDPPFNIKECQQRGLTYASPLRAKVRLVILDKESPTKPVVK 120 Query: 121 EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 180 EMKEQEVYMGELPLMT+TGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR Sbjct: 121 EMKEQEVYMGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR 180 Query: 181 IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAE 240 IIPYRGSWLD+EFDPKDILFFRVDRRRKMPVTILLKAIGMT EQIL NFFVFD+F LHA+ Sbjct: 181 IIPYRGSWLDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFTLHAD 240 Query: 241 GADMEFVSERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLG 300 GA+M+FV+ERLRGEVARFDITDK+GKV+VAKDKRIN+KHVRD+EAAGIK ISVPEDYLLG Sbjct: 241 GAEMKFVAERLRGEVARFDITDKAGKVLVAKDKRINSKHVRDVEAAGIKQISVPEDYLLG 300 Query: 301 RVLAKNIVDPDTGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTD 360 R+LAKNIVD DTGEV+ASANDELT++LLA+LRE IS IQTLYTNDLDQGGYISQTLR D Sbjct: 301 RILAKNIVDADTGEVIASANDELTDDLLARLREGKISHIQTLYTNDLDQGGYISQTLRMD 360 Query: 361 DTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDEL 420 DT DQ AA+VAIYRMMRPGEPPTE+SVEALFNGLFY+ DRYDLSAVGRMKFNRR+GRD L Sbjct: 361 DTNDQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYNPDRYDLSAVGRMKFNRRIGRDSL 420 Query: 421 TGTMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480 TG MTLSN+D+LAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA Sbjct: 421 TGDMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480 Query: 481 VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540 VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG Sbjct: 481 VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540 Query: 541 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV 600 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV Sbjct: 541 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV 600 Query: 601 EGSKVTNQIDYLSAIEEGRYVIAQANATIDGEGKLSDELVSAREAGETILVSPERVQYMD 660 EGSKVT+QIDYLSAIEEGRY+IAQANATID G LSDELVSAREAGETILVSPERVQYMD Sbjct: 601 EGSKVTDQIDYLSAIEEGRYIIAQANATIDKAGMLSDELVSAREAGETILVSPERVQYMD 660 Query: 661 VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT 720 VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEK LVGTGIERTVAVDSGT Sbjct: 661 VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGT 720 Query: 721 TVQALRGGVVDYVDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKIG 780 TVQALRGG+VDY+DAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIV++G Sbjct: 721 TVQALRGGIVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVG 780 Query: 781 DRVAKHDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840 DRVAKHDVIADGASTD+GELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE Sbjct: 781 DRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840 Query: 841 ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVEAGDTLVGKVTPKGETQ 900 ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEV AGDTLVGKVTPKGETQ Sbjct: 841 ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQ 900 Query: 901 LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELK 960 LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGI RDKRAQQIIDDEL+ Sbjct: 901 LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDELQ 960 Query: 961 RYRLDLNDQLRIVEGDAFQRLERLLIGKVANGGPKKLVKGTKLDKAYLDDLDKFHWFDIR 1020 RYRLDLNDQLRIVEGDAFQRLE++L+GKV NGGPKK+ KGTK+ YL DLDK+HWFDIR Sbjct: 961 RYRLDLNDQLRIVEGDAFQRLEKMLVGKVVNGGPKKIAKGTKITAEYLADLDKYHWFDIR 1020 Query: 1021 PADDDIANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQ 1080 P+DD ANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQ Sbjct: 1021 PSDDTSANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQ 1080 Query: 1081 PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA 1140 PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPAD+VLNPLGVPSRMNVGQVLEVHLGWAA Sbjct: 1081 PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLGWAA 1140 Query: 1141 KGLGLRLGEMVQAQAKVAELRKFLTTIYNESGKQEELDSFTDEEIIELVTNLKKGVPFAT 1200 KGLGLR+GEM+ Q ++AELRKFL IYNESGK E+LDSF+D EI+EL +NLK GVPFAT Sbjct: 1141 KGLGLRIGEMLNTQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELASNLKNGVPFAT 1200 Query: 1201 PVFDGAHEEETRRMLDLAYPDPIAKQLGMTPSKNQVTMYDGRTGEAFERTVTVGYMHYLK 1260 PVFDGA E ETRRMLDLAYPD IAKQLGMT SKNQVTMYDGRTGEAFERTVTVGYMHYLK Sbjct: 1201 PVFDGADEGETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVGYMHYLK 1260 Query: 1261 LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK 1320 LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK Sbjct: 1261 LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK 1320 Query: 1321 SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERE 1368 SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLER+ Sbjct: 1321 SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD 1368 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,573,369 Number of extensions: 112021 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 1 Length of query: 1368 Length of database: 1,000,347 Length adjustment: 93 Effective length of query: 1275 Effective length of database: 693,912 Effective search space: 884737800 Effective search space used: 884737800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)