BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0105.p
         (200 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093442|ref|YP_001098517.1| putative methionine biosynthesi...   350   3e-98

>gi|134093442|ref|YP_001098517.1| putative methionine biosynthesis
           protein MetW [Herminiimonas arsenicoxydans]
          Length = 200

 Score =  350 bits (897), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 162/200 (81%), Positives = 182/200 (91%)

Query: 1   MTFEQLSALRPDLAFIAHWVREKSQVLDLGCGDGVMLDYLQSDKGCSGYGVEIDDAQIPK 60
           M FEQLSALRPDLAFIAHWV    QVLDLGCGDGVMLDYLQ+DK CSGYG+EIDD +IP+
Sbjct: 1   MNFEQLSALRPDLAFIAHWVGTGKQVLDLGCGDGVMLDYLQTDKQCSGYGIEIDDDKIPE 60

Query: 61  CVARNVSVIQQDLNGGLAMFEDNAFDTVLCLSALQMVKDVEGTLREIARVGREVTVSFPN 120
           CV R VSVIQ+DL  GLA+F DN+FDTVLCLSALQM+K+VEG LR+I+RVGR+  VSFPN
Sbjct: 61  CVQRGVSVIQRDLEAGLAIFADNSFDTVLCLSALQMMKNVEGVLRDISRVGRDAIVSFPN 120

Query: 121 FAYWPHRVALLRGRMPVSRSLPYQWYDTPNLRCATIRDFEALANELGLEVLECVALKDGK 180
           FAYWPHR+ALLRGRMPVS+SLPY+WYDTPNLRCATI+DFE LANE+GLEV+ECVAL+DG 
Sbjct: 121 FAYWPHRIALLRGRMPVSKSLPYEWYDTPNLRCATIKDFEELANEVGLEVIECVALQDGH 180

Query: 181 PVRYLPNWRGSLAVFRLRKK 200
           PV +LPNWRGSLAVFRLRKK
Sbjct: 181 PVSFLPNWRGSLAVFRLRKK 200


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,626
Number of extensions: 14309
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 123
Effective length of database: 746,632
Effective search space: 91835736
Effective search space used: 91835736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)